Advenella kashmirensis: TKWG_18260
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Entry
TKWG_18260 CDS
T02117
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aka
Advenella kashmirensis
Pathway
aka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TKWG_18260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aka03019
]
TKWG_18260
Enzymes [BR:
aka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TKWG_18260
Messenger RNA biogenesis [BR:
aka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TKWG_18260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFK63520
UniProt:
I3UET2
LinkDB
All DBs
Position
complement(3143601..3145031)
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AA seq
476 aa
AA seq
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MTDANTTTSGKTTTFESFTEVGLHPDLLKAVMASGYTKPTPIQEQAMPLIMDGRDIMGAA
QTGTGKTAAFTLPLLHRLMPMANSSMSPARHPVRALILAPTRELADQVAESVKRYSHSSP
LRVAVVFGGVDMNAQRDQLRKGCELLIATPGRLLDHIEQKNVSLSQVSVLVLDEADRMLD
MGFLPDLERIVRLLPKPRQSLLFSATFSNDIRKLARSFLNNPVEINVAPRNATAETVTQI
AYPVAPNEKKAAVLYTLKSRNLSQVIVFVNTKIGASRVARELVSEGINAESIHGDRSQAE
RIKALEGFKSGEIAVLVATDVAARGLDVVGLPCVINMDLPYNAEDYVHRIGRTGRAGAKG
EAIAFYTQTEERLLEDIEKLIKTPVPRGVLSIPSVFLARGHHPARAASGKPERYKKTFPA
ARATPIDDFFFRPYEPTKQKAESDTVVNRRPEGHGPKPMLAVLLGGRPSTDNSPEN
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgccaatacgactacttccggcaaaaccactaccttcgaatcctttaccgag
gtcggcctgcaccccgatctgctgaaggcggtgatggccagcggctataccaagccaacg
cccatccaggaacaggccatgccgctgattatggacgggcgcgacatcatgggcgcagcc
cagaccggcacgggcaaaacagcggcatttacgctgccgctgctgcaccggctcatgcct
atggccaacagcagcatgtcgccagcccgccatccggtgcgcgccctgatcctggcgccc
acgcgggaactggccgatcaggtcgcagaaagcgttaaacgctacagccacagctctccc
ttgcgcgtggctgttgtttttggtggagtggatatgaacgctcagcgcgatcagttgcgc
aagggctgcgagctgctgattgccacgccgggacgactgctggaccatatcgaacagaag
aacgtcagtctgagccaggtcagcgtgctggtgctggatgaggctgatcgcatgctggat
atgggttttctgccagatctggaacgcatcgttcggttactgcccaaaccgcgccaaagc
ttgttgttttccgcgacgttcagtaatgatatccgtaagctggcgcgcagtttcctgaac
aatccggtggaaatcaatgtcgcgccgcgcaatgccacggccgaaaccgtcacacaaatt
gcctatccggtcgcgccaaatgaaaagaaagcggcggtgctgtatacgctgaagtcgcgc
aacctgagccaggtcattgtttttgtcaataccaaaatcggcgccagccgcgtcgcccgg
gaactggtcagtgaaggcatcaatgccgagtccattcacggcgatcgctcgcaagccgag
cgcatcaaggcgctcgagggcttcaagtcgggcgaaattgcggttctggtggccaccgat
gtggcggccaggggcctggacgtggtcggcttgccttgcgtgatcaatatggacctgccc
tataacgccgaagactacgtgcaccgtatcggccgtaccggcagggcaggtgcgaagggc
gaggccatcgccttttatacgcaaaccgaagagcgcctgctggaagatatcgaaaagctg
atcaaaacaccggtaccacggggtgtgctatccattcccagcgtttttctggcgcgcgga
catcacccggcgcgagctgcaagcggcaagcctgaacgctacaagaaaacttttcctgcg
gcccgggccacccccattgacgactttttctttcgtccttacgagccgaccaagcaaaag
gccgaatccgacactgtggtaaaccggcgccctgaagggcatggacccaagcccatgctg
gccgttttgctgggtggccgtcccagtaccgacaactcacccgaaaactga
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