Advenella kashmirensis: TKWG_25130
Help
Entry
TKWG_25130 CDS
T02117
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aka
Advenella kashmirensis
Pathway
aka03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aka00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TKWG_25130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aka03021
]
TKWG_25130
03400 DNA repair and recombination proteins [BR:
aka03400
]
TKWG_25130
Enzymes [BR:
aka01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TKWG_25130
Transcription machinery [BR:
aka03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TKWG_25130
DNA repair and recombination proteins [BR:
aka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TKWG_25130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
AFK64571
UniProt:
I3UHT3
LinkDB
All DBs
Position
complement(4308304..4312554)
Genome browser
AA seq
1416 aa
AA seq
DB search
MKGLLGLFKQISPDEQFDAIKIGIASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVTKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFTALM
GAEAVRELLRTIDIDREAESLRAELKATSSDAKIKKISKRLKVIEGFQKSGIKPDWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPDIILRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEIMGLATTIKAAKKLVEAHEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNILFPASGEPSIVPSQDIVLGLYYATRERINGKGEGLFFADLAELIRAYDNR
EVELQSRVTVRLNEYEKDDQGEWQPVLRRFETTVGRAILSEILPNGLPFSVLNRALKKKE
ISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRGGISIAMGDMVIPTVKEEILTQASNE
VKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVGKAMMEQLATEPVVTRLGENARQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITETDCGTSNGYLMKALVEGGEVIEPLHDRIL
GRVAAADIVNPDTQETAIAAGTLLDEDAVELIDRIGVDEVKIRTPLTCETRHGLCAHCYG
RDLGRGNMVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAMASSVETKSAGTVGF
AGSMRYVTNAKGERVAISRSGEIVIFDDSNRERERHKIPYGATVLVGDNDTVKAGTRLAS
WDPLTRPIVSEYSGEVRFENIEEGQTVARQVDDVTGLSTLVVITPKSRGGKTLMRPQIKL
INEAGEEVKIAGTDHSVNISFPVGALITVRDGQQVNIGEILARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLADVTGTVSFGKDTKGKQRLVITETDGTVHEFLIPKEKQVLVHDG
QVVNQGEMIVDGPADPHDILRLQGIEKLAIYIVNEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTSFITGEQVERAELLNENDRVVADNKIPATYDNILLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGMSFHLARKAKEESERAERA
AVRAQENPFEESAPVTLDNVFAPLGTNTDEEPPAAE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgaagggattactaggtttattcaaacagatttccccggatgagcagttcgatgccatc
aagattgggattgcctctcctgaaaaaatccgttcatggtcctatggcgaagtcaaaaag
ccagaaaccatcaactatcggacattcaagccggaacgtgatggtttgttctgcgccaaa
atctttggcccgatcaaggattacgaatgtctttgcggtaaatacaagcgcctgaaacat
cgtggcgtgatctgcgaaaaatgcggcgttgaagtgacggtgaccaaagtgcgtcgtgaa
cgcatgggtcacattgaactggccagcccggttgcgcacatctggttcctgaaaagcctg
ccatcccgtctgggtatggtgctggacatgaccctgcgtgatatcgaacgcgtactgtac
tttgaagcatggtgcgtgatcgagccaggcatgacgccgctcaagcgcggtcagatcatg
tccgacgacgatttcctggccaagactgaagagtacggcgacgacttcacggccctgatg
ggtgcggaagccgtgcgggaactgctgcgcacgatcgatatcgatcgcgaggcggagtct
ttgcgcgccgaactgaaggcaaccagctccgatgccaagatcaaaaagatctccaagcgt
ctgaaagtgattgaaggcttccagaaatccggtatcaaaccggactggatggtcatggaa
gtgctgcccgtgctgccgccggacttgcgtccgttggtgccattggatggcggccgcttt
gcgacctctgacctgaatgacctgtatcgtcgcgtgattaaccgtaataaccggctcaag
cgtctgatcgaactgaaggcaccagacatcattctgcgtaatgaaaaacggatgctgcag
gaatcggttgactcgctgctggataacggtcgtcgcggcaaggccatgactggcgccaac
aagcgtcagctcaaatccctggccgatatgatcaagggtaaaagcggtcggttccgtcag
aacttgctgggtaaacgcgtggactactctggtcgttccgtgatcgtggtgggtccgcag
ctcaaactgcaccaatgcggtctgcccaagctgatggcgctggaactgttcaagccgttt
atttttaaccgtcttgagattatgggtctggcgaccacgatcaaggctgcgaaaaaactg
gttgaagcgcacgagcctgtggtctgggatatcctggaagaagtgattcgcgaacaccct
gtcatgctcaaccgtgcgcctacgctgcaccgtctgggtattcaggcattcgaaccggtc
ctgatcgaaggtaaggcgattcagctgcacccactggtgtgtgcagcctttaacgccgac
tttgacggtgaccagatggctgttcacgtgcccctgtcgctcgaagcacagctggaagcc
cgcaccctgatgctggcctccaacaatatcctgtttcctgccagcggcgagccttccatt
gtgccttctcaggatatcgtgctgggtttgtactacgcaacccgtgaacgtatcaatggc
aagggcgaaggtctgttctttgccgatctggcagagctgattcgtgcctatgacaatcgt
gaagtcgagctgcagtcacgcgtgactgtgcgtctgaacgaatacgagaaagacgaccag
ggcgaatggcagcctgtgctgcgccgctttgaaacaaccgttggccgtgcgatcctgtcg
gaaattctgcctaacgggctgccgttcagcgtgctgaaccgtgccctgaagaagaaagaa
atttcacgcctgatcaaccagtcgttccgtcgttgtggcctgcgcgatacggtgattttt
gccgacaagctgatgcagtccggtttccgtctggcgactcgtggcggtatttcaattgcc
atgggcgacatggttatcccaactgtgaaggaagaaattctgacgcaggccagcaatgaa
gttaaagagatcgacaagcagtattcgtcaggtctggtaacttcgcaggaacggtataac
aacgtggtcgacatctggggcaaggccggtgataaagtgggcaaggccatgatggagcaa
ctggcgacagagccggttgtaacccgtctgggcgaaaatgcccgccaggaatcgttcaac
tccatttacatgatggccgactccggcgcccgtggttcagcagcgcagattcgtcagctg
gccggtatgcgtggcctgatggccaagcctgatggctcgatcattgaaacgccgattacc
gcgaacttccgtgaaggtctgaacgtactgcagtacttcatctccacccacggtgcacgt
aaaggtctggccgataccgcgctgaaaaccgcgaactcaggttacctgactcgtcgtctg
gttgacgtgacccaggatctggtcatcactgaaaccgattgcggcacaagcaacggctat
ctgatgaaagccctggttgaaggcggtgaggttatcgaaccgttgcatgaccgtattctg
ggtcgtgtagcggctgccgatatcgttaatcctgatacacaggaaacggcgattgctgcc
ggcaccctgctggatgaagatgcggtagagctgatcgatcgcattggcgtggatgaagtc
aagatccgcacaccgctgacctgcgaaacccgtcatgggctttgcgcacactgctatggc
cgtgacttgggtcgcggcaatatggtcaacaccggtgaagccgtgggtgtgattgctgct
cagtctattggtgaaccgggtacccagctgaccatgcgtacgttccacattggtggtgcg
gcctcacgtgcagccatggcctcttcggttgagaccaagtctgccggtacggttggcttt
gccggttccatgcggtatgtgaccaatgcgaaaggcgagcgtgtggccatttcccgttcc
ggtgaaatcgtgattttcgacgatagcaaccgtgaacgtgaacgtcacaagattccttat
ggcgcaaccgtgctggtgggcgataacgataccgtgaaagccggtacacgcctggcttca
tgggatccgctgacccgtccgatcgtgtccgaatactcgggtgaggtccgcttcgagaat
atcgaagagggtcagactgttgccagacaggtggatgatgtaaccggtctgtccacgctg
gtggtcattacaccgaaatcacgcggcggcaaaacgctgatgcgtcctcagatcaagctg
atcaacgaggccggtgaagaggtcaagattgctggtaccgaccactccgtgaatatttca
ttcccggttggcgcgctgattaccgtgcgtgacggacagcaggtcaatattggtgagatt
ctggctcgtattccacaggaatcacagaaaacccgcgatattaccgggggtctgcctcgt
gtggccgagctgttcgaagcccgttcgccgaaagacgccggtatgctggcagatgtcaca
ggtactgtgtcgtttggtaaggataccaagggtaaacagcgtctggtcattaccgagacc
gatggtacggtgcatgagttcctgattccgaaagagaaacaggtgctggtacacgacggc
caggtggtcaaccagggtgagatgattgtagacggtccggctgatcctcacgatattctg
cgtctgcagggcatcgagaagctggcaatctacatcgtcaacgaagttcaggacgtgtac
cgtctgcagggcgtgaagatcaatgacaagcacattgaagtgatcgtacgtcagatgctg
cgtcgtgtgaacatcgtggatgcgggcgatacctcgttcatcacgggtgaacaggttgag
cgtgccgaattgctcaacgagaatgatcgtgtggttgccgacaacaagattccggcgacc
tacgacaatatcctgctgggtattaccaaggcatcgctgtccaccgactcgttcatctct
gcggcttccttccaggaaaccacaagggtgctgaccgaagcggccatcatgggtaaacgt
gatgatctgcgcggtctgaaagaaaacgtgatcgtgggacgtctgattcctgccggaacc
ggtatgtctttccacctggctcgcaaagccaaagaggaaagcgaacgtgccgaacgcgct
gccgtgcgtgcccaggagaatcctttcgaggagtctgcgccggttacgctggacaacgtg
tttgcacctttgggtaccaacaccgacgaagagccgcctgctgcagaataa
DBGET
integrated database retrieval system
