Apis laboriosa (Himalayan honeybee): 122712303
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Entry
122712303 CDS
T07817
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
alab
Apis laboriosa (Himalayan honeybee)
Brite
KEGG Orthology (KO) [BR:
alab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
alab03016
]
122712303
Enzymes [BR:
alab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
122712303
Transfer RNA biogenesis [BR:
alab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122712303
Prokaryotic type
tRNA splicing ligases
122712303
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
122712303
NCBI-ProteinID:
XP_043787774
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYQEELKFLEKITDTCWKIKKGFQPNMKVEGVFYVNNTLERLMFDELKNACRPGAV
GGFLPGMKQIANVAALPGIVWRSVGLPDVHSGYGFAIGNMAAFDMNDPKSIVSPGGVGFD
INCGVRLLRTNLFEEDVQPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADSSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFRLSPDDLDMHVIYDVSHNIAKIE
EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTDQAM
KETFGSTCHGAGRALSRAKSRRNLDYTDVLEKLERQGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISRKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagttcgacaatatcaagaagaattaaaattcttagaaaaaataactgatacatgc
tggaaaataaaaaaaggttttcaacctaatatgaaggttgaaggtgttttttatgtaaat
aatacattagaacgtttaatgtttgatgaattgaaaaatgcatgtagaccaggagcagta
ggtggctttcttccaggcatgaaacaaattgctaatgttgctgcccttcctggaattgtt
tggagatctgttggattgcctgatgtacattctggatatggttttgctattggtaatatg
gcagcatttgatatgaatgatccaaaatctatagtatcacctggtggagtaggatttgat
ataaattgtggagtacgattattaagaactaatctttttgaagaggatgttcaacctgta
aaggaacaacttgcccaaagtatgtttgatcatattcctgttggtgttggttcaaaagga
attatacctatgaatgcacgtgatttagaagaagctttagaaatgggaatggattggtcc
ctcagagaaggttatatttgggcagaagataaagaacattgtgaagaatatggtagaatg
cttaatgcagattcttcaaaagtatcaatgagagctaaaaaacgtgggcttccacagtta
ggaactttaggagcaggaaatcattatgctgagattcaagttgtagatgaaatttatgat
aaatgggctgcatgcaaaatgggaattgaagaaaaaggtcaaatttgtgttatgattcat
tctggtagtagaggatttggacatcaagttgcaactgatgctcttgtacaaatggaaaaa
gctatgaaacgagacaatattgaaactaatgatagacaattagcatgtgctcatatcaaa
tctcaagaaggtcaagattatctaaaatcaatggctgcagctgctaattttgcttgggtt
aatagaagctctatgacatttcttagtcgacaggcatttgccaagcaattccgattatct
cctgatgatttagatatgcatgttatatatgatgtctctcataatattgcaaaaatagaa
gaacatatggtcgatggaaaacagaaaacacttctagtacatagaaaaggatcaacaaga
gcatttccacctcatcatcctttgattcctgtagactatcaattaacaggtcaacctgtt
ttaattggaggtactatgggaacttgtagttatgttcttactggaactgatcaagctatg
aaagaaacatttggatctacttgtcatggagcaggacgagctttatctagagcaaagtca
cgtagaaacttggattatacagatgtattagaaaaattagaacgacaaggaatatcaatt
agagtcgcttcgcctaagctagtaatggaagaagcaccagaatcttataaaaatgtaacg
gacgttgtaaatacatgtcatgctgcaggcatttcgcggaaatgtataaaattaagaccg
attgcagttatcaaaggataa
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