Apis laboriosa (Himalayan honeybee): 122712610
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Entry
122712610 CDS
T07817
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
alab
Apis laboriosa (Himalayan honeybee)
Pathway
alab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122712610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alab03019
]
122712610
03041 Spliceosome [BR:
alab03041
]
122712610
Messenger RNA biogenesis [BR:
alab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122712610
Spliceosome [BR:
alab03041
]
Complex B
Other components
Prp19-related factors
122712610
Complex C
122712610
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
ARM_TT21_C
DHR-2_Lobe_A
TPR_10
PPR
ARM_TT21
4HB_MCP_1
NRDE-2
Microp_apicomplexa_6
Motif
Other DBs
NCBI-GeneID:
122712610
NCBI-ProteinID:
XP_043788322
LinkDB
All DBs
Position
Unknown
AA seq
837 aa
AA seq
DB search
MLERKDPEGNIYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSNNLNIVYERALKE
LPGSYKLWYNYLRQRINQLKGRCITDLLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQ
CYITRTRQVFDRALRALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLRSIGRLDEAAVKLAQIVNQDDFISKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKRMEEAAKNPTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRV
RLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVEFGKFYEENNQIADARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENKYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEFCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEDNT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVASNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNTSNSLSDVPADAMRLLDSKTQDNITTYKDSIKFVRG
VTEKDGKPESQVNNPDEIDIDINDVNEGDIEEDIPIEKQTIPSQVFSSLKTTDDEDD
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgttagaacgaaaagatccagaaggaaatatatacgttttcaatgaggaagatttaccg
tacgaagaagaaattttaagaaatccatattctgtaaaacattggcaacgttatatagat
cacttaaaaagtacaaaaagtaataatttaaatattgtatatgaacgagcattgaaagaa
cttcctggaagttacaaattatggtataattatcttcgtcaacgtatcaatcaattgaaa
ggaagatgtataactgatcttctttatgaagatgtaaataatgcatttgaacgtgcttta
gttttcatgcataaaatgcctagaatttggatggattattgtacattaatgacagaacaa
tgttatattacacgtactcgtcaagtttttgatagagcacttagagctcttcctattaca
cagcatcatcgtatatggccattgtacattgaatttttgaaaaaacacaatgtatatgaa
actgcagtcagagtttttagacgatatttaaagttagctccagaagacacagaagaatat
atagaatacttgagatcaattggaaggcttgatgaagcagctgtaaaacttgcacaaatt
gttaatcaagatgattttatatcaaagcatggaaaatctaatcatcaattatggaatgaa
ttgtgtgatttaatatcaaagaatccttctaaaataaaatctcttaatgtggatgctatt
attagaggtggattaagacgttatactgatcaattaggtcctttgtggaattctttagca
gattattatgttcgtagcggtttatttgaaagggcaagagatatttatgaagaagcaata
caaacagtaactactgttagagattttactcaagtatttgatgcctatgcacaatttgaa
gaacttagtcttagtaaacgtatggaagaagctgcaaaaaatcctactgaagatgatgat
attgatttggaattgagattagcacggtttgaacatttaatggaaagacgtttattactt
ttgaattctgtattactcagacaaaatcctcataatgtacaagaatggcataaaagagtt
agactttatgaaggacaaccacacgaaatcattaatacatatacagaagctgtacaaact
gtgcaaccacaattagcagtaggtaaattacatactttatgggttgagtttggtaaattt
tatgaagaaaataatcaaatagcagatgctagagtagtttttgaaaaagcaactcatgtt
ccttatactaaagtagacgatctcgcttctgtatggtgtgaatgggcagaaatggaaatt
aggcatggaaattataaagaagcattaaaacttatgcatcgcgcgacagctatgccattt
cgcaaagtagcttatcatgacgagacagaaacagttcaaatgagattatacaaatcttta
aaagtttggtctatgtatgctgatttagaagaaagttttggaacatttaaaacatgcaaa
gctgtatatgacaaaattatagatctaaaaattgcaacaccacaaatcattattaattat
ggtctttttttggaagaaaataaatattttgaagaagcttttagagcttatgaaaaaggt
attgcactctttaaatggcctaatgtttatgatatatggaatacatatcttacaaaattt
ttaaagcgttatggtggaacaaaattagaacgaacgcgagatttatttgaacaatgttta
gaattttgtccaccaaaatatgctaaagctttatatttactgtatgcaaaattagaagaa
gaacatggtttagctagacatgcgatgtctgtatatgaacgagcaacaaatgctgttctt
cccgaagaaagatttgagatgttcaatatatatataaaaaaagcagcagatatatatggt
gtaccaaaaacaagacagatatatgaaaaagctattgaagtacttaatgaagataataca
agagaaatgtgtttaaggtttgcagaaatggaaacaaaattaggagaagttgatagagct
cgggcaatatatgcccactgcagtcaaatttgtgatccaagagtagcatcaaatttttgg
caaatatggaaagaatttgaagtaagacatggtaatgaagatactatgcgtgaaatgctt
cgaattaaacgtagtgtacaagctatgtacaatactcaagtaaatatgatgtctgcacaa
atgttgaataatacatcgaattcactatcagatgtaccagcagatgcaatgcgtcttttg
gatagtaaaacacaagataatattactacatataaggatagtattaaatttgttcgtggt
gtaacagaaaaagacggtaaaccggaatctcaagtaaataatccggatgaaatagatatt
gatattaatgatgttaatgaaggagatatagaagaagatatacctattgaaaaacaaact
attccgtcacaagtgttcagtagtttaaaaacaactgatgatgaagatgattaa
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