Apis laboriosa (Himalayan honeybee): 122718044
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Entry
122718044 CDS
T07817
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
alab
Apis laboriosa (Himalayan honeybee)
Pathway
alab03013
Nucleocytoplasmic transport
alab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
alab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122718044
03015 mRNA surveillance pathway
122718044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alab03019
]
122718044
Enzymes [BR:
alab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122718044
5.6.2.5 RNA 5'-3' helicase
122718044
Messenger RNA biogenesis [BR:
alab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122718044
mRNA cycle factors
Common to processing body (P body) and stress granule
122718044
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
UvrD-helicase
NAT10_TcmA_helicase
DEAD
ATPase
NPHP3_N
SRP54
nSTAND3
AAA_22
AAA_16
nSTAND_NTPase5
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
122718044
NCBI-ProteinID:
XP_043798645
LinkDB
All DBs
Position
Unknown
AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDAAQSQPNQ
PVQVNGTSGSSSLDLKISGAAQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGTSLSK
NKQGPRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgatgcatatggacctagcagtcagacccttacgtttctcgacacagaggaa
gctgatttaatcggtgcagacacgcagggtagcgaatttgatttcaccgattttacatta
ccctcaccgagtcaaactcaagcttcgcaacacgatgctgcccaaagtcaacctaaccag
cctgtacaggttaatggaacaagtggcagttcatctttagacttgaaaatttctggagca
gcacaaagtcttgcagaattacagtttgaagaagaagaagaagaagcatactacaatcgt
gatttaccagaacatgcatgtaaatattgtggtattcatgaagcatcttgtgttgttatg
tgtaatgtctgccgcaaatggttttgtaatggacgtggaaatacatctggttctcatatt
attaaccatcttgttcgagctaaacataaggaagttactttacacagagatggccctttg
ggagaaactgttctggaatgttattcatgtgctgttaggaatgtttttgttcttggtttt
attcctgctaaagcagattctgttgttgtattactctgccgccaaccatgtgcagctcaa
agttccttgaaggatatgaattgggatcaagaacaatggaaaccattgattgaagatcgt
tcttttttagcttggttagtaaaaatcccatcagaacaggaacaattacgtgccagacaa
atttctgctcaacaaatcaataagttggaagaattatggcgggacaatgtcgatgcgact
ttccaagatcttgaaaaacctggagtagatgaagaaccgcaacaagtacttctgcgatat
gaagatggataccaataccagaatatatttggtccactcgtaaaattagaagccgattat
gataaacgtttaaaagaatctcaaactcaagagaacatcgaagtacgttgggatgttgga
ttaaataaaaagacaatcgcctatttcatgttagccaaaacagacggtgatatgaagtta
atgcatggagatgaactgagacttcgctatttgggtgaacttcacaaaccttggtctgga
attggacacgtgattaaaattcctgataattatggagaagaagtcgggattgaattaaaa
aataattctggcgctccgacggaatgtgttagtaatttcgtcgttgattttatttggaaa
agtacaagttttgatcgcatgcaattagcattgcggaaatttgctgtggatgatacttct
gtatccggttacatatatcatagattattaggacatgaagtggaagaagttctatttcgc
tgccatcttcctaagcattttagtgctccaaatttgccagatttaaatcgttctcaagta
tatgctgtaaaacatgctgtacagagacctttatctttgattcaaggaccacctggaaca
ggaaaaactgtaactagcgctacgatagtttatcaacttgtaaaacaaaacggtggtccc
gttttggtatgtgctccttcaaatacagctgtggatcaactcacagaaaaaatacataaa
tctaatttaaaagttgtacgactctgtgcaaaatcacgagaagcaatcgattcgccagta
agctttcttgctcttcataatcaaatcaaaaatatggagacaaatactgaattgcaaaag
ttgcagcaattaaaagatgaaaccggagaattatctagcgttgatgaaaaacgttacaga
ttattgaaaaaagcagcagaaaaagaattattggaagcagctgatgtaatttgctgtacc
tgtgttggagctggtgatcctagattacacaggctcaagtttcattcgattcttattgat
gagagtatgcaagcaactgaacctgaatgtatggtgccagttgttcttggagcaaaacaa
ttaattctcgtcggtgatcattgtcaattaggaccagtagttatgtgcaaaaaagctgca
agagcaggtttatcacaatctcttttcgaaagactagttgtacttggaattagacctttc
agattagaagtacaatatcgtatgcatccagatctttctcgatttccatcaaattttttc
tatgaaggttctttgcaaaatggtgtatgtgcagatgaaagaaaattgttgaaaattgat
tttccttggcctgcacctgacaaacctatgtttttttatgttactcaaggtcaagaagaa
atagctggaagtggtacatcgtatttgaatcgaacggaagcatctaatgttgaaaaaata
gcaactagatttttacgttgtggtgtaaagcctgaacaaattggagtaataactccatac
gaaggtcaacgagcctatttagttcaatatatgcaataccaaggatctttgcactcaaaa
ctttatcaggagatcgaagttgccagtgtagatgcatttcagggtagagaaaaggatata
ataattatgtcttgcgtccgatcgaatgaacatcaaggtattggatttctgaatgaccca
cgaaggttaaatgtggctttaacccgagccaagtatggaatcataattgtaggaaatccg
aaagtattatcaaagcaaccattatggaatcatttattgagtttttataaagaacaaaaa
gttctagtagaaggaccgttgaataatcttaaagaatctatgattcaatttgctaagcca
aagaaactcgttaatgctgctaatccaggttctcatttcatgtctacgtcaatgtatgac
gcaagagaagctcttattccaggttccgtgtacgatcgatcaggtactcaggttaatgga
acgcaaaatcataatccttattatcaaagaaatgtacctttagatatattcagtaggacc
catgacaccataagctatatcagtccagagagagctcaagcagcgatgaataatgttcca
gttccagtaggaatgtttatgaatatggcacatgtgcctccacgattttataatcaacat
cagcaagcattacaggctagacaaaaccaacgtaatcgtcgaggaacatctttatcgaaa
aataagcagggtccacgaatgggcaaactaagtcaaacggaacaaaatactcaaccatat
agtcagccaggtttaccattaactcagggtacgacacagggaatgtcgcaaccaggtttc
agtctttctcaacccggtcttagtcaagcagagctttctcaagattcgtttgctgtcgga
gaatttcaatcgcaaatggatggtttattatctcaagattcaacttatcaaggtgatcga
agtggtttttatcaatctggacagtcacaagctgggggacagttctcccagccatattga
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integrated database retrieval system
