Apis laboriosa (Himalayan honeybee): 122720882
Help
Entry
122720882 CDS
T07817
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
alab
Apis laboriosa (Himalayan honeybee)
Pathway
alab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alab00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122720882
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alab00536
]
122720882
Glycosaminoglycan binding proteins [BR:
alab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122720882
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Herpes_gI
Motif
Other DBs
NCBI-GeneID:
122720882
NCBI-ProteinID:
XP_043803868
LinkDB
All DBs
Position
Unknown
AA seq
1753 aa
AA seq
DB search
MIADIILQDMEKDIVDLVDGIGMQQERIGVTITQNRCHRNDTIAYDIAESALLTIDTNTL
FPTGIPRDFSILVVAKPKIGYPVATLFAIYNDSGEEQLVLSLGNDVILYYSTTPDDKGKA
ISFGIDISDGKWHRLGISIKGNTVTLILDCARQISKELRRNLDERIDINGIVIIGQQIVD
GNMYLGGLEMLKIAPIPDAAYEICTIFAADCKNHTRHRFTTTRNNNPTIRTTYYEDASQT
IRSSSYAGEAFSTTRSYYETNYNNLNSSQNYGRISSTISKLNVSYNEESENLKKTDEEKE
ENGSEEENSWIEDNDDYNYRPVNKSYASRSTTDTHLRNQSAMFSNNIDGTTIDRYETTPA
QIPEISDNLIGKIRDGLKYTESSSEGSYYGSSYYNSRGPPGPRGFPGPPGVAGPSGKKGE
PGRDGLAGLPGVPGSPGNVFIIPTLNQQGNEKGPDAQMEALRQMLSQHMIAMRGSEGPMG
LTGISGPEGPPGPQGQKGEPGEIGEPGPRGERGIPGNTGREGRRGRPGRDGERGLSGVPG
MKGEQGVPGLPGLPGDKGERGAVGATGEQGLPGHEGMQGDDGPPGLPGLPGEMGPRGFIG
PRGFPGLPGNPGIPGTEGPPGAKGNTGPPGPPGSPGSPGPIGAVGPPGPQGLLGPTGLVG
PQGKPGIPGLSGADGSPGHPGNPGIPGTKGEQGLQGPQGPIGFPGVRGIKGDEGKRGSPG
ERGEKGEKGVEGEKGDVGAKGEPGLSGPQGIPGLEGLEGPKGFEGPRGESGLIGPPGEKG
KTGPPGFVGYPGNPGEKGDKGQLGREGPNGDKGERGTNGAQGERGEPGPRGFRGARGRRG
AEGLPGPKGDTGQPGPQGLQGEPGPPGIEGPRGFVGAPGQIGLNGKDGILGPPGERGPVG
DSGPPGPPGAPGVIGPQGPAGEPGQPGEPGSPGNPGVPGELGPPGQQGKEGPQGPPGLPG
KEGLPGPGGLPGFPGERGLSGLPGMPGIKGEIGPPGLPGPSGDKGVQGEPGKDGEPGPQG
SQGSKGPPGPIGLKGDRGESGPIGPIGRDGLPGQRGLPGSPGPVGVPGEDGDKGDIGPPG
EKGFKGSQGETGPSGPIGIQGIRGEPGAIGLPGEKGPPGEIGRQGAKGEDGPVGASGPPG
PVGPQGLPGSQGLKGEMGDTGLVGPVGPAGSPGVQGPRGPKGSEGLQGPSGPEGLQGQKG
EAGAPGLPGSIGPEGKPGERGPPGPKGEEGKSGPPGPPGERGINGPEGPKGNAGPPGFPG
SPGEPGLIGVKGDSGKDGEDGKAGDPGPPGEIGPPGKEGLPGPPGKQGSEGPAGVQGSPG
SPGEKGDMGPPGAQGSPGSIGPQGLPGPFGLPGVRGLPGLAGENGPPGMAGAIGAPGKVG
PIGPKGPKGDRGKRGLKGHRGELGDAGMKGEEGEKGEQGPRGVPGSEGPKGNQGPPGSIG
FKGNDGPPGLPGIEGLVGPKGSAGNDGPKGETGPPGPPGPPGPPAEQPMIPPELLFTKEQ
LLENKDEEEKNSESLNKDDHVEEELGPKFLDMYSSIYAMRQELDRIRKPIGSRENPARTC
KDLFYGHPHFHDGWYWIDPNLGMADDSVYVYCNMTNMGETCVYPDIHTSQMPNIPWRKEN
NKTDWYSNLRGGFKITYEAIGVVQLNFLRLLSQEAYQNFTYTCINSVAWYNILNFNYNSS
IRLLGANEDEFSYTGIKPQIVMDNCKTRKNKGETVLLIQSKKLQQLPLVDFYPIDYGLPH
QAFGFTVGPICFK
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atgatagccgatattatcttacaggatatggaaaaggatatcgtggatctggttgacggt
attggaatgcaacaagagcgcatcggagtgacaataacccaaaatcgttgtcacagaaat
gacacgatcgcgtacgacatcgcggaaagcgcgctactcacgatcgatacgaacaccctg
ttccccactggtataccacgcgatttttccattttggtcgttgccaagccaaaaatcgga
tatccagttgccacgctgtttgccatctacaacgacagtggtgaggaacagttggtgtta
tcattgggcaatgacgtcattctttactatagcacaactccggatgacaaaggcaaggca
atatcgttcgggattgatatttccgatggcaaatggcaccgtttaggaatcagtattaaa
gggaacaccgtcactctgattcttgactgtgctcggcaaatttcgaaagagctgcgaaga
aaccttgacgaaaggatcgacatcaatggcatcgtaatcattggccaacagatcgtggat
ggcaatatgtatttgggtggcttggagatgctgaagattgccccgatcccggatgcggct
tacgaaatctgcacgattttcgcggctgactgtaagaatcatacgagacatagattcacg
accacgcgtaataataatcccacgattcgtaccacttattacgaggacgcgagtcaaaca
atccgaagttccagctacgcgggtgaagcattctcaactactagatcgtattacgaaaca
aattacaataatttaaactcgtctcaaaattatggcagaatatcgtctacgatatctaaa
ctaaatgtttcgtataacgaagaaagtgagaatctaaagaagacggatgaagagaaggaa
gagaacggaagcgaggaagagaactcatggatcgaagataacgacgattataattacagg
cctgtgaataagtcatacgcttcgagatcaaccacggacactcatcttcgtaatcaaagt
gctatgttttccaacaacattgacggaacaacgatagatcgttacgaaacgacacctgca
caaattcctgaaatttccgataatttaatcggaaaaattcgggacggattgaaatatacg
gagtcttcttcggaaggatcgtactacggctcgagttattataatagcaggggtccacct
ggaccacgaggatttccaggaccaccaggtgtggccgggccgtccggtaaaaaaggggag
ccgggaagagatgggttggcaggtttacccggtgtacctggttcaccgggaaacgtgttc
ataataccgacattgaatcagcaaggtaacgagaagggaccggatgctcagatggaagct
ttgaggcaaatgctttcgcagcatatgatagctatgaggggtagcgagggtcctatgggc
ctgacgggtatctctgggcccgaaggacctccaggacctcaaggccagaaaggagaacct
ggcgaaattggcgagcctggccctcgtggagaaagaggtattcctggaaatactggtagg
gagggtagacgaggtcgacctggtagagacggggaacgaggtttaagcggagtaccgggg
atgaaaggagagcaaggtgtacctggattgcctggattgccaggagataaaggggaaaga
ggagctgtgggtgctaccggggaacaaggtttgccaggtcacgagggaatgcagggtgac
gatggtccaccaggtttgccaggtttacccggtgaaatgggtccaagaggatttataggg
ccacgaggttttcccggattaccaggaaatcctggtattcctggaaccgaaggtccgcca
ggagcaaagggcaatactggaccacctggtcctccaggctcaccaggctctccgggtcca
atcggagctgtaggtccaccaggacctcaaggtcttctgggcccgactggtttagtgggg
ccacaaggaaagcctggaattcctggtctgtcaggagcagacggatcgcctggtcatcct
ggaaatccaggcattcctgggacgaagggtgaacaaggtctgcagggtccgcagggtccg
ataggttttccaggagttcgcggtattaaaggtgacgaaggaaaacgtggatcgcccggc
gaacgcggagaaaaaggtgaaaagggtgtggaaggggagaaaggtgacgttggcgcgaaa
ggggagcctggattatcaggtccgcaaggaattcctggactggaaggtctggaagggcct
aaaggttttgaagggccgcgtggtgaaagtggactgattggaccgccaggtgagaaagga
aaaactggtcccccaggttttgttggatatccaggaaatcctggggagaaaggtgataaa
ggtcaacttggaagagaaggtcctaatggagataaaggagaaaggggtactaatggcgca
caaggggaacgtggtgaaccaggtcccagaggatttagaggtgctcgtggtagaagagga
gctgaaggattgccaggaccgaagggtgacactggacaaccaggcccccaaggattgcaa
ggagaacctggcccaccaggcatcgaaggacctcgtggatttgtaggagctcctggccaa
attggtctcaatggaaaagatggtattcttggtcctcctggagaacgagggccagtggga
gattctggaccgccaggtcctccaggcgcgcctggcgttattgggccgcagggaccggct
ggtgaaccaggccaaccaggagaacctggaagtccaggaaatccaggagtacctggagaa
ttaggtccgccagggcagcaaggaaaagaaggaccacaaggaccgcctggtcttcctgga
aaagagggtctaccaggtcctggtggcttaccaggatttcctggcgaacgagggctaagt
ggtttaccgggaatgccaggtataaaaggagagataggaccaccgggtcttccgggtcca
tcaggcgataaaggcgttcaaggtgaacctggaaaagatggtgaacctggtcctcaggga
agccaaggatcaaaaggacctcctggaccaattggtttaaaaggagacaggggtgaatct
ggaccgatcggtcctattggacgagatggcttaccagggcaacgtggcttgccaggttct
cctggtcctgttggggttccaggagaagacggtgacaaaggagatattggaccacccggg
gaaaaaggatttaaaggatctcaaggggaaacgggtccttcaggaccaattggcatacag
ggaattcgcggagaacctggggctatcggtttgccaggtgagaaagggccaccaggagaa
attggaagacaaggagcaaaaggggaagatggtcctgttggagcatcaggacctcctggt
cctgtaggaccgcaaggattgcccggttcacaaggattaaaaggagaaatgggggatacg
ggattagttggccccgtaggacccgcgggaagtccaggtgtacaaggtccaaggggtcct
aagggaagcgaaggtttgcaaggtccctcagggccggaaggtcttcaaggacaaaaggga
gaagctggagcaccaggattaccaggctcgataggtccagaaggaaaaccaggtgaaaga
ggtcctccaggtccgaaaggagaagaaggaaagagtggtcctccagggccgcccggtgaa
cgcggtataaatggtccggagggaccaaagggtaatgcaggacctcctggtttccctgga
tcaccgggagaaccgggtttaattggtgtgaaaggggattctggaaaagacggtgaggat
ggcaaagctggagatcctggaccaccgggagagattgggcctccaggaaaagagggtcta
cctggccctcctggaaaacaaggatctgagggaccagcgggagtgcaaggaagtccgggt
tcgccaggagagaaaggagacatgggtcctcctggtgcacagggaagtccgggatctata
gggcctcaaggtcttcctgggccatttggtttgccaggtgtaagagggcttccagggctt
gctggagaaaatggtccccccgggatggcaggagccattggcgccccaggaaaagttgga
ccgattgggcccaagggtccaaagggtgacagaggtaaacgaggactcaaaggacatcga
ggcgaattaggagatgctggtatgaagggagaagagggggagaagggggaacaaggacca
cgaggcgttccgggctccgaaggtcccaagggtaaccaggggccaccaggttcgataggg
ttcaagggaaacgatggacctccaggacttcctggaatagagggactggtaggacccaaa
ggtagtgctggaaacgatgggccaaaaggtgaaactggtcctccgggtcctccaggtcct
cctggaccacccgctgagcaaccaatgattcctccggaactgttgttcacgaaagaacaa
cttttggaaaataaggatgaagaggagaaaaattcggaaagtttgaacaaagatgatcac
gttgaagaggaattaggtcccaaattcttggatatgtacagttctatatacgctatgagg
caagaattggatcgaatacgtaaaccaattggaagtagagaaaatcctgcgagaacttgt
aaggatctgttttacggccatccccatttccacgatggttggtactggatcgatccaaat
ttaggaatggcggacgattctgtatacgtttattgtaatatgacgaatatgggcgaaacg
tgcgtgtatccagatattcatacgagtcaaatgccaaatataccatggagaaaggaaaat
aataaaactgattggtattcgaatttacgcgggggatttaaaattacatacgaagctatt
ggagtagtgcaattaaattttctgcgtttactgagtcaagaagcttatcaaaatttcact
tacacttgcattaacagtgttgcctggtacaatattttgaattttaactataattcctcc
atacgactgcttggtgcgaacgaggatgaattttcatacaccggtatcaagccacaaatc
gtaatggacaattgcaaaacgcgtaagaacaaaggtgaaacggtgctcttaattcagagt
aaaaaattgcaacagttaccattggtggatttttatcctatcgattatggattacctcat
caggcgtttggtttcacggttggcccaatttgtttcaaataa
DBGET
integrated database retrieval system