Aristaeella lactis: JYE50_02865
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Entry
JYE50_02865 CDS
T09242
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
alac
Aristaeella lactis
Pathway
alac02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
alac00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JYE50_02865 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alac03021
]
JYE50_02865 (rpoD)
Transcription machinery [BR:
alac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JYE50_02865 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HTH_10
HTH_28
Exonuc_VII_L
HTH_29
HTH_20
Sigma70_r4_2
Phage_terminase
HTH_24
HTH_23
Sp-DndD
Resolvase
DnaD_N
HTH_36
Motif
Other DBs
NCBI-ProteinID:
QUA53594
LinkDB
All DBs
Position
complement(603582..604709)
Genome browser
AA seq
375 aa
AA seq
DB search
MSQSPENRQNRLDELYEYGKSRGTITYKEIMDRLSGMDLDADQLDRVLETLEAYGVSVVN
ESADRQVTLTEEQAADQAAEVASIEGDDNTPIDLSVPEGISIDDPVRMYLKEIGKVPLLT
ADEEIEIAKRLEAGDESAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVE
KFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQEYGRE
PTPEEIAKEMGISESKVREIIKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAASF
ALMKEQLMDVLDTLTPHEEKVLRLRFGLDDGHQRTLEEVGKEFNVTRERIRQIEAKALRK
LRHPSRSKKLRDYLD
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacagtcacccgaaaacaggcagaaccgtctggacgagctttatgagtacggcaag
tccaggggaacgatcacttacaaagagatcatggaccggctttccggcatggatctcgac
gccgaccagctcgaccgcgtgcttgaaacgctcgaagcctacggtgtgtctgttgtcaat
gaaagcgctgaccgtcaggtgaccctgacagaagaacaggcggctgaccaggctgccgaa
gtcgccagcattgaaggggatgacaatacccccatcgacctgagcgttccggaaggcatc
agcatcgatgacccggtccgcatgtacctcaaggaaatcggcaaggttccgctcctgacc
gcggatgaggaaatcgagatcgcaaagcggctggaagccggtgatgaaagtgccaagcag
aagctggcggaagccaaccttcgcctggttgtttccatcgccaagcgctatgtcggccgc
ggcatgctcttcctcgacctgatccaggaaggcaacctgggcctgatcaaggccgtcgag
aagtttgactaccgcaagggcttcaagttctccacctacgccacctggtggatccgccag
gccatcacccgcgccatcgcggaccaggcccgcaccatccggatccccgtgcacatggtt
gaaaccatcaataagctgatccgcatttcccgccagctcctccaggaatacggccgtgaa
cccacaccggaagagatcgccaaggaaatgggcatttccgagtccaaggtccgggagatc
atcaagattgcccaggagcccgtatcccttgaaacccctatcggtgaagaagaggacagc
cacctgggtgacttcatccccgatgaggacgcccccgcccccgcggaagccgcttccttt
gccctgatgaaggaacagctcatggatgtactggacaccctgaccccccatgaagagaaa
gttctccgtcttcgtttcggcctggatgacggccatcagcgcacgctggaggaagtcggc
aaggaattcaacgttacccgtgagcgtatccgccagatcgaggcaaaggccctgcggaag
ctccgtcatccgtcccgcagcaaaaaactgcgtgattatctcgactga
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