Aristaeella lactis: JYE50_04675
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Entry
JYE50_04675 CDS
T09242
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
alac
Aristaeella lactis
Pathway
alac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYE50_04675 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alac03021
]
JYE50_04675 (rho)
03019 Messenger RNA biogenesis [BR:
alac03019
]
JYE50_04675 (rho)
Transcription machinery [BR:
alac03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JYE50_04675 (rho)
Messenger RNA biogenesis [BR:
alac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JYE50_04675 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
OB_RNB
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QUA53924
LinkDB
All DBs
Position
972536..974284
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AA seq
582 aa
AA seq
DB search
MTYNELNQLTVLQLRKLAKENSVVLGSGIDKAGIIEKLLPVLSDDAEPAQAANEESTLAE
PKYQAAWHNSDAPRYSARPAYQAPGTAPRPAWQNTSPSGQHMTLEQQHVQPTRPGGFTPR
FGPAAAQPPVQHTASSEEKTEQPAAPVASPIPEKRIARAPEAGFGPRSFGPGSTPVQRYQ
ESSFPPVPSQDSGIQAPTLEELLAAGDYEEGGGILELHPDGYGFLRNTSFQPSTKDIYVS
MAQIRRFGLRTGDFIKGKIRPQREGDKYAALLYISSVNDIPEEEAFNRPAFDELTPVYPS
RRISLESKDGKSFPDMRLVDLIAPLGFGQRGLMLCPPQTGKTEIMQHFASVVCENYPDVH
VLMLMIDVNPEDVTVIRDSVPCTVLASTFDQPPEAHLRLSEIVLERAMRLVEQKKDVVLI
VDSLTRLAKIYTTAAAQQGRSLPGMVNPSSLFRAKRLFGAARSCKEGGSLTVLAAMDIAT
GSKVDDSVVEEFKGTANMELTLDQNVARAGVTPSLNLQQSYTKNSDILLDSREKEGLSLI
RTMLGNTSSSVAIPQLVSMMEKTDSNAALLLKMKDWFALMNR
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgacctacaatgaactcaatcaactgacggtacttcagctgcgcaaactcgcgaaagag
aattcggtggttctcggctccggaattgataaggccggaatcatcgaaaagcttcttcct
gtcctttccgatgatgcggagcccgctcaggccgccaatgaggaaagcacactggcggaa
cctaagtaccaggctgcctggcacaattcagacgcccccaggtacagcgcccgtccggct
tatcaggccccgggcacagcaccccgtcctgcctggcagaacacttctccttccggacag
catatgacgctggaacagcagcatgtacagcccacccgtccgggcggatttactccccgc
ttcggtcctgctgcggcccagccgcctgtacagcatacagcttcctctgaagaaaaaaca
gaacagcccgctgcccctgtcgcttcccctattccggagaagcggatcgcgcgcgcgcct
gaagccggtttcggtccccgttccttcggcccgggatcgacgcctgtgcagcgctatcag
gaatcttccttccctcctgttccttcgcaggattccggtatccaggctcccacgctggag
gaactgcttgccgccggtgattatgaagaaggcggcggcatcctggaacttcatcccgat
ggatacggtttccttcgcaataccagtttccagccctccaccaaggatatctatgtctcc
atggcacagatccgccgtttcggactgcgcaccggtgatttcattaaaggaaagatccgt
ccccagcgtgagggcgataaatacgccgcgcttctgtatatttccagtgtcaatgacatt
ccggaggaagaagccttcaatcgtcccgcttttgatgaactgacgcccgtctatcccagc
cgcaggatctccctggaaagcaaagacggcaagtcttttccggatatgcgccttgtggac
ctgatcgcgcctctcggtttcggccagcgcggcctgatgctctgtcctccccagaccggc
aaaaccgaaatcatgcagcatttcgcctctgtcgtctgtgaaaactatccggacgttcat
gtcctcatgctcatgatcgacgtcaatccggaggatgtcacggtcatccgtgattccgtt
ccctgtacagtgcttgcttccacctttgaccagccgccggaagcccatctccgcctgtct
gagatcgtgctggagcgcgccatgcgcctggttgaacagaagaaagacgttgtcttgatc
gtggacagcctgacccgcctggcgaagatctataccaccgcagctgcccagcagggacgc
agcctgcccggcatggtcaatccctccagtcttttccgcgccaagcgtctcttcggcgcc
gcccgttcctgcaaggaaggcggaagcctcaccgttctggccgccatggatatcgccacc
ggttccaaggtggatgattccgttgtggaggaattcaagggtaccgccaacatggagctg
accctggaccagaatgtggcccgggccggcgtaacaccctccctgaacctgcagcaaagc
tataccaagaattccgatatcctgctggacagccgcgaaaaggaaggcctttccctgatc
cgtaccatgctgggaaacacttcctcctctgtggcaattccccagctggtttccatgatg
gagaagaccgattccaacgcagcgctgctgctcaagatgaaagactggtttgccctcatg
aacagataa
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