Aristaeella lactis: JYE50_05865
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Entry
JYE50_05865 CDS
T09242
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
alac
Aristaeella lactis
Pathway
alac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JYE50_05865 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alac03021
]
JYE50_05865 (rpoC)
03400 DNA repair and recombination proteins [BR:
alac03400
]
JYE50_05865 (rpoC)
Enzymes [BR:
alac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JYE50_05865 (rpoC)
Transcription machinery [BR:
alac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JYE50_05865 (rpoC)
DNA repair and recombination proteins [BR:
alac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JYE50_05865 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QUA54146
LinkDB
All DBs
Position
1254689..1258258
Genome browser
AA seq
1189 aa
AA seq
DB search
MFELSNLDSIQIGMASPEQILAWSHGEVTKPETINYRTLKPERDGLYCERIFGPTKDWEC
NCGKYKRIKFKDKDKICDKCGVQVTRAKVRRERMGHIQLAAPVSHIWYFKGIPSRMGMLL
DISPRNLEKVLYFANFIVLDPGNSEETGLKRLELINDARYREVEAKCGKGSFVAKMGAEA
VQDLLKELDLDQLATDLKAEIATLTEKERDRETEGQKRARAVKRLEVVESFRTSHNKPEW
MILTVVPVIPPDLRPLIQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEK
RMLQESVDALIDNGRRGRPVTGPGNRALKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIV
VGPELKLYQCGLPKEMALELFKPFVMERLVTLKLSHNVKSAKRAVEKVRPEVWDILEEVI
RDHPVLLNRAPTLHRLGIQAFEPILVEGKAIKLHPLACTAFNADFDGDQMAVHVPLSMEA
QAEARFLMLAHNNILKPQDGRPVISPSQDMVIGCYYLTIVHEGAKGSGRVFSSEDEAIMA
YSLGQITLQSPIKVRIFRTFGEESGSRLIDTTLGRLIFNDALPQNLGFVKRECLDDMFQL
EIDELVGKKQLSKIVDQCFHTQGEHKTAQVLDKIKALGFKYSTVGAITVSVADIKVPEVK
KTMLEEADESVRKVNNLYRRGLLSEDERYNRVINIWTECTANLKNQILPNLDKFNPIRMM
TDSGARGSSAQVSQLAGMRGLMASPSGKTIELPIRANFREGLTVLEFFLSSHGSRKSLAD
TALRTADSGYLTRRLVDVSQEVIVREDDCFESRGEKVRGISVAELMSGKQSIESLEDRLR
GRTAAEDIIDPATGEVLVRMNEPIDYMMAREIVARGITKATVRSVLTCRTENGVCARCYG
ENMAHGGKVDVGEAVGIIAAQAIGEPGTQLTMRTFHTGGIAGADDITQGLPRVEELFEAR
KPKRDAILAEIAGTVSIQETKKRRELVITSDEDPKDTKSYQITYGSRLKVGVGDHVEAGD
ELTEGSVNPHDLLRILGVKAVQEYLLKEVLSVYRLQGVGVSDKHIEIIIRQMLRKVRVED
SGDTDLLTGSLVDIFRFEEANRKAIMEGGTPAIAKRILLGITKASLATESFLSAASFQET
TRVLTEAAIRGKIDPLIGLKENVILGKLIPAGTGMKRYKDIEIKDSYSF
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgaactttctaatctggactctattcagatcgggatggcttcccccgagcagatc
cttgcgtggtctcacggtgaggttaccaaacccgaaactatcaactaccgcacgctgaag
cccgaacgggacggtctgtactgcgaacgcatcttcggacccaccaaggactgggagtgt
aactgcggtaagtataagcggatcaagttcaaggataaggacaagatctgcgacaagtgc
ggcgtgcaggtcacccgggcgaaggtccgccgtgagcgcatgggccatattcagctggct
gcccctgtcagccacatctggtacttcaagggcatccccagtcggatgggtatgctgctg
gatatctccccccgcaatctggagaaagttctctattttgccaacttcatcgtcctggat
ccgggcaacagcgaagagaccggcctgaagcggctggagctgatcaatgacgcccgctac
cgcgaagtcgaagccaagtgcggcaagggctcctttgtcgccaagatgggtgctgaagcg
gtgcaggacctgctgaaggaactggacctggaccagctggccaccgacctgaaggccgag
atcgccacgctgaccgaaaaggaacgtgaccgcgaaactgaaggccagaagcgcgcccgc
gctgtcaagcgcctggaagtcgtggaatccttccgcaccagccataacaaacccgagtgg
atgatcctcactgttgtgccggttatccccccggatctgcgtcccctgatccagctggac
ggcggccgttttgccacctctgacctgaacgatctgtaccgccgggtcatcaaccgcaac
aaccgcctgaagagactgctggagctgggcgctccggacatcatcgtccgcaatgaaaag
cgtatgctgcaggaatctgtggacgccctgatcgacaacggccgccgcggccgtccggtc
accggtcccggaaaccgtgccctgaagtccctatctgacctgcttcgcggtaagcagggc
cgtttccgccagaacctgctgggtaagcgcgttgactactccggccgttccgttatcgtt
gttggtccggaactgaagctgtatcagtgcggtctgcccaaggaaatggcgctggaactg
ttcaagcccttcgttatggagcgcctggtcaccctgaagctctcccataacgtgaagtcc
gccaagcgggccgtcgaaaaggtccgtcccgaggtgtgggacatcctggaagaggtcatc
agggatcatccggtgctgctgaaccgcgcgcctaccctgcaccgcctcggtatccaggcc
ttcgagcccatcctggtcgaaggtaaagccatcaagcttcacccgctggcctgtaccgcc
ttcaacgccgacttcgacggcgaccagatggctgtgcacgtcccgctgtccatggaagcc
caggcggaagcccgcttcctgatgctggcccataacaatatcctgaagccgcaggatggc
cgcccggtcatttctccctctcaggacatggttatcggctgctactacctgaccatcgtt
cacgaaggcgccaagggatccggccgggtcttctcctccgaggatgaagccatcatggct
tactccctgggacagatcaccctgcagtcccccatcaaagtccggatcttccgtaccttc
ggtgaggaatccggctccaggctgatcgacaccaccctcggccgcctgatcttcaatgac
gcgctgccgcagaacctgggcttcgtgaagcgtgagtgcctggatgacatgttccagctg
gaaatcgacgaactggtcggcaagaagcagctgtccaaaatcgttgaccagtgtttccac
acccagggcgaacacaaaaccgcccaggtgctggacaagatcaaggcgctgggcttcaag
tactccaccgtgggtgccatcacggtgtccgttgcggacattaaggtgcctgaagtgaag
aagaccatgctggaagaggctgatgagtctgtccgcaaggtcaacaacctgtaccgccgc
ggtcttctgtccgaggatgagcgttacaaccgcgtcatcaacatctggaccgagtgcacc
gccaacctgaagaatcagattctgccgaacctggacaagttcaacccgatccgcatgatg
acagactccggcgcccgcggttcttccgcacaggtgtcccagctggccggcatgcgcggt
ctgatggcctctccttccggtaagaccatcgagctgcccattcgtgcaaacttccgtgag
ggcctgacggttctggaattcttcctctcctctcacggttcccgtaagtccctggccgac
acggctctgcgtaccgctgactctggttacctgacccgtcgtctggtggacgtttcccag
gaagtgatcgtccgggaagatgactgcttcgaatcccgtggtgaaaaggtccgtggtatc
agcgtagccgagctcatgagcggcaagcagtccattgaatccctggaagaccgtctccgc
ggccgtaccgctgctgaagacatcatcgatcccgccaccggcgaagtgctggtccggatg
aacgagcccatcgactatatgatggcccgtgagatcgtggcccgcggcatcaccaaggcc
actgtccgttccgtcctcacctgccgtaccgaaaacggtgtctgcgcccgctgctacggc
gagaacatggcccacggcggcaaggtggatgtcggtgaggctgtcggtatcatcgctgcc
caggctatcggtgaacccggtacccagctgaccatgcgtaccttccataccggtggtatc
gcgggtgctgacgacatcacccagggtcttccccgcgttgaggaactgttcgaggcccgc
aagccgaagcgtgacgccatcctggctgagatcgccggcacggtttccatccaggagacc
aagaagcgccgcgaactggtcatcacctccgatgaagatcccaaggacaccaagtcctac
cagatcacctacggttcccgcctgaaggtcggtgtaggcgatcatgtggaagccggcgat
gagctgactgaaggctccgtcaatccccatgacctgcttcgtatcctcggtgtgaaagcc
gttcaggaatacctgctgaaggaagttctctccgtttaccgcctccagggcgttggcgtg
agcgacaagcacatcgagatcatcatccgccagatgctgcgcaaggttcgcgtggaagac
agcggagataccgatctgctgaccggctccctcgtggatatcttccgctttgaggaagcc
aaccggaaagccatcatggaaggcggcacccccgccatcgccaagcgtatcctgctgggc
atcaccaaggcttccctggccaccgaaagcttcctgtccgcggcttccttccaggagacc
acccgcgtgctgaccgaagccgctatccgcggtaagatcgacccgctgatcggtctgaag
gagaacgtcatccttggtaagctgatccctgccggtaccggcatgaagcgctacaaggat
atcgagatcaaggactcctacagcttctaa
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