Aliarcobacter lanthieri: ALANTH_0046
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Entry
ALANTH_0046 CDS
T06854
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
alan
Aliarcobacter lanthieri
Pathway
alan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALANTH_0046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alan03019
]
ALANTH_0046
03009 Ribosome biogenesis [BR:
alan03009
]
ALANTH_0046
Enzymes [BR:
alan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ALANTH_0046
Messenger RNA biogenesis [BR:
alan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ALANTH_0046
Ribosome biogenesis [BR:
alan03009
]
Prokaryotic type
rRNA helicases
ALANTH_0046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
PDXDC1-like_cen2
DUF4919
GvpH
Motif
Other DBs
NCBI-ProteinID:
QKF58187
LinkDB
All DBs
Position
56769..58277
Genome browser
AA seq
502 aa
AA seq
DB search
MTFKDFNFKEQLQKSIEEAGFKEPSPIQMEAIPHILNGKDIVGQAHTGTGKTAAFGLPTL
NQLSGKNAEALIIVPTRELAMQVSDEIYRFGKFLNLNTATVYGGQSYTRQLKLIESASVI
VATPGRFLDLLRNEQIKIKPKFVILDEADEMLDMGFLDDIKEIFTYLPKQRQTLLFSATM
PTAIKNLAKTILNEPEFVTITKADVTNSNITQTFYVVDERERDDALIRLFDYKNPKKAII
FCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIKAFKSSKLEILIATDVAARGLD
VNDVTHVFNYHLPFDSESYVHRIGRTGRAGKDGVAISIVTPHEFKTLQRIEKTIGTKLES
KVVPNISTVKEKKIDELKTNIVNQEIKDYAIDLVESLKDEFDISTIAFKLASIIASKTYV
KGNNNIGKSEIDLKKLIETIAKGGDGRDDRRRSSSRGRERGRRDRDYGNNGGGRSRNRSS
SSRGPKTNSDKPARTHRDRKKD
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgacttttaaagattttaattttaaagagcaacttcaaaaatcgattgaagaagctgga
tttaaagaaccaagcccaatacaaatggaagcaattccacatatattaaatggaaaagat
attgttggacaagctcatacaggaacaggtaaaacagcagcttttggactaccaactcta
aatcaattatctggtaaaaatgcagaagcattaatcattgttcctacaagagaacttgca
atgcaagtttctgatgaaatttatagatttggaaagtttttaaatctaaatactgcaaca
gtttatggtggacaatcatacactagacaactaaaacttatagaaagtgcaagtgttatt
gttgcaactccaggaagatttcttgacttactaagaaatgaacaaataaaaataaaacca
aagtttgttattttagatgaagcagatgaaatgcttgatatgggatttttagatgatatt
aaagaaatatttacttatcttccaaaacaaagacaaacacttttattctcggcaactatg
ccaactgctattaaaaatttagcaaaaacaattttgaatgaaccagaatttgtaactatc
acaaaagctgatgttacaaattcaaatattacacaaactttttatgttgtagatgaaaga
gaaagagatgatgctcttattagactttttgactataaaaatccaaaaaaagctattatt
ttttgtagaacaaaaaaagatgttgatagactatcgacttttttagtttctcaaggattt
atggcaaaagctcttcatggtgatatggaacaaaagcaaagagaagaagcaataaaagct
tttaaatcttcaaagttagagattttaattgctactgatgttgcggcacgtggactagat
gtaaatgatgtaacgcacgtatttaattatcatttgccatttgatagtgaatcttatgta
catagaataggaagaacaggacgagcaggtaaagatggtgttgctatttcaattgttact
cctcatgagtttaaaacacttcaaagaatagaaaaaacaattggtacaaaattagaatca
aaagttgttccaaatatatcaacagttaaagaaaagaaaattgatgagctaaaaacaaat
atagtaaatcaagaaatcaaagattatgctattgatttagttgaaagtttaaaagatgag
tttgatatttctacaattgcttttaaattagcttcaattattgcttcaaaaacttatgta
aaaggaaacaataatattggtaaaagtgaaattgatcttaagaaacttatagaaactatt
gctaaaggtggtgatggtagagatgatagaagaagatcatcttctcgtggtagagaaaga
ggaagaagagatagagattatggaaataatggtggaggaagaagtagaaatagaagttca
tcttcaagaggaccaaaaactaattcagataaaccggctagaactcatagagatagaaaa
aaagattaa
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