Aliarcobacter lanthieri: ALANTH_0289
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Entry
ALANTH_0289 CDS
T06854
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
alan
Aliarcobacter lanthieri
Pathway
alan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALANTH_0289 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alan03019
]
ALANTH_0289 (rnr)
03016 Transfer RNA biogenesis [BR:
alan03016
]
ALANTH_0289 (rnr)
Enzymes [BR:
alan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ALANTH_0289 (rnr)
Messenger RNA biogenesis [BR:
alan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ALANTH_0289 (rnr)
Transfer RNA biogenesis [BR:
alan03016
]
Prokaryotic type
tRNA degradation factors
ALANTH_0289 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
CSD2
Motif
Other DBs
NCBI-ProteinID:
QKF58421
LinkDB
All DBs
Position
286801..288648
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AA seq
615 aa
AA seq
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MLKDLFIKIQTNISNFSNNEKKELEKFIKDEIVIKVDEHYEINSKYKIATLKIEKNFAVL
EDLISPLKNVKIELNKLNGAFDNDLVLAKRIFNPRSKTKAKIVKILEGKKTEILVYVSNK
NFYTLKEHIELKSNKAINYKDNDVVIIDNKEFEEIKFIGNLDEPKIDEFISLYLNGENYR
DEIKIEPEAFMNDEKQRVDLTTLPFCTIDPNSAKDHDDAIYYDVENATLYVAIADVSFFV
KENSDLDKLAYRKSSTIYLASRTLPMLPPILSENLCSLKEQETRYAFVFKLVLDLKNLSV
KKSELFEAIIKSHRNFSYGRIDRVIDGYFDTYTNLEKEIFDYLLPLYEVTKTFRQKRLKK
GFDFRTQENRLKLKNHLLQSVEVETSTASHQLVEECMLQANIEASRKVGNIGIFRIHEEP
SFKNISKLVDDVNILGVKAKLQDSVNSTILHIQEEAKKVLLSNEVDELIIQSLTQAKYSS
KNLGHFGLGFSSYAHFTSPIRRYSDLVLHRILKSKQIPKDIDDICLHISNQERKIDQIVW
DFEDRKYARWANNNIGIELKVKIVDTQRAKAVCYDKMVGLKVVLENYKAQKLFSKIKVKI
ISANIATKVIVATIL
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaaagatttatttataaaaatacaaacaaatattagtaatttttcaaataatgaa
aaaaaagagttagaaaaatttataaaagatgaaattgtaataaaagtagatgaacattat
gaaataaactctaaatataaaatagcaactttaaaaattgaaaaaaactttgctgtttta
gaagatttaataagcccattaaagaatgtaaaaattgaattaaataagctaaatggggca
tttgataacgatttggttttagcaaaaaggatttttaatccaagaagtaaaacaaaagca
aaaatagtaaaaattcttgaaggtaaaaaaactgaaattttagtttatgtatcaaataaa
aatttttatacactaaaagagcatatagaattaaaaagtaataaagcaataaattacaaa
gataatgatgtagtaataatagataataaagagtttgaagaaattaaatttattgggaat
ttagatgagcctaaaatagatgaatttatctctttatatttaaatggtgagaattacaga
gatgaaataaaaattgaaccagaagcttttatgaatgatgaaaaacaaagagtagattta
acaactttaccattttgtactattgatccaaatagtgcaaaagatcatgatgatgcaata
tattatgatgttgaaaatgcaactttatatgtagcaatagctgatgtttcattttttgta
aaagaaaatagtgatttagataaattagcatatagaaaatcttcaactatatatttagct
tcgagaactttaccaatgttacctccaattttaagtgaaaatctttgttcactgaaagaa
caagaaactagatatgcttttgtttttaaattagtattagatttaaaaaatttaagtgtt
aaaaaatccgaactttttgaagctattataaaatctcatagaaatttctcctatggaaga
attgatagagttattgatggatactttgatacttatacaaatttagaaaaagagattttt
gattatttattaccactttatgaggttaccaaaacatttagacaaaaaagattaaaaaaa
ggttttgattttagaacacaagagaataggttaaaacttaaaaaccatcttctacaaagt
gtagaagttgaaacttcaaccgcttctcatcaattagtagaggaatgtatgttacaagca
aatattgaagctagtagaaaagttggaaatattggaatttttagaattcatgaagaacca
tcttttaaaaatatttcaaaattagttgatgatgtaaatattttaggggtgaaagcaaaa
cttcaagatagtgttaatagcacaattttacatattcaagaagaggcaaaaaaagtactt
ttgagtaatgaagtagatgaacttataatccaaagtttaactcaagcaaaatattcttca
aagaatttaggacattttggtttaggattttcttcatatgctcatttcacaagtcctatc
cgaaggtattctgatttagttcttcatcgtatattaaagtcaaaacaaattccaaaagat
atagatgatatatgtttacatatttctaatcaagagagaaaaatagatcaaatagtttgg
gattttgaggatagaaaatatgcaagatgggcaaataataatattggaatagagctaaaa
gtaaaaatagtagatacacaaagagctaaagcagtttgttatgacaaaatggttgggcta
aaagtagttttagaaaattataaagcacagaaactattttcaaaaataaaggtgaaaata
atttctgctaatattgcaactaaagtgattgttgcaactattttataa
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