Aliarcobacter lanthieri: ALANTH_0341
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Entry
ALANTH_0341 CDS
T06854
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
alan
Aliarcobacter lanthieri
Pathway
alan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALANTH_0341 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alan03021
]
ALANTH_0341 (rho)
03019 Messenger RNA biogenesis [BR:
alan03019
]
ALANTH_0341 (rho)
Transcription machinery [BR:
alan03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ALANTH_0341 (rho)
Messenger RNA biogenesis [BR:
alan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ALANTH_0341 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
ATPase_2
AAA
S1CSD-TOTE-2
Spore_III_AA
AAA_22
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QKF58473
LinkDB
All DBs
Position
complement(337975..339297)
Genome browser
AA seq
440 aa
AA seq
DB search
MEESKEEIKTKTTKKTRTHIPVEGYKIEQLRELPLETLLDIANELEVENPQELKRQDLMF
MILASQIDAGGFILFTGILEIKEGGFGFLRAIDGNFSDTSNDSYVSATQIRKFALRTGDI
VTGQVRPPNKDSEKYNALLKIEAINYLPVKDSKNRPLFDNLTPLYSTTKFKFEYDSQKLT
GRVLDLFAPMGKGQRSLIVAPPKTGKTELLKELAHAISRNHPEVTLMVLLIDERPEEVTD
MQRSVKGEVYSSTFDLPAHNHVRVAEIVIEKAKRLVEMKKDVVILLDSITRLARAYNTVT
PSSGKVLSGGVDANALHKPKRFFGAARNIEEGGSLTIISTALIDTGSKMDEVIFEEFKGT
GNSEVVLSRNAANKRVYPAIDITKSGTRKEELLLSADTLQKTWILRNAMSEMDEVDVLKF
LYPKMQKTKNNDDFFASMNE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctaaagaagaaataaaaacaaaaactacaaaaaagacaagaacacatatc
cctgttgaaggttataagattgagcaattaagagagcttcctttagaaactctattagat
attgcaaatgaacttgaagttgaaaatccacaagaattaaaaagacaagacttaatgttt
atgatacttgcttctcaaattgatgctggtggatttattttattcactggtattttagag
ataaaagaaggtggatttggatttttaagagcaattgatggaaatttttctgatacatca
aatgattcttatgtaagtgcaactcaaattagaaaatttgcacttagaacaggagatatt
gtaactggacaggttcgtccaccaaataaggatagtgaaaaatacaatgctttattaaaa
attgaagctataaattatctgccagtaaaagattcaaaaaatcgtccactttttgataac
ttaactccactatattcaactacaaaatttaaatttgaatatgattcacaaaaactaaca
ggacgtgtattagatctatttgctccaatgggtaaaggacaaagaagtttaatagttgct
ccaccaaaaactgggaagacagaacttttaaaagaattagcacatgcaatttcaaggaat
catccagaagttactttaatggtattattaattgatgaaagaccagaagaagtaacagat
atgcaaagaagtgtaaaaggcgaggtttatagttcaacatttgatttacctgctcataac
catgttagagttgctgaaatagttattgaaaaagctaaaagacttgttgaaatgaaaaaa
gatgttgttattttacttgattcaatcacaagattagctcgtgcatataatacagtaact
cctagttcaggaaaagttctttctggtggagttgatgcaaacgctttacataagccaaaa
agattttttggagctgcacgtaatattgaagaaggtggaagtttaactattatatcaaca
gctttaattgatactggttcaaaaatggatgaagttatatttgaagaattcaaaggaact
gggaatagtgaagttgtattaagtagaaatgctgcaaataaaagagtatatcctgctatt
gatattacaaaatctggtacaagaaaagaagaacttttacttagtgctgatactttacaa
aaaacatggattttaagaaatgcaatgagtgaaatggatgaagttgatgttcttaaattc
ttatatccaaaaatgcaaaaaacaaagaataatgatgatttttttgcttctatgaatgaa
taa
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