KEGG   Acanthopagrus latus (yellowfin seabream): 119004316
Entry
119004316         CDS       T08233                                 
Symbol
hltf
Name
(RefSeq) helicase-like transcription factor
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
alat  Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:alat00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:alat04121]
    119004316 (hltf)
   03400 DNA repair and recombination proteins [BR:alat03400]
    119004316 (hltf)
Enzymes [BR:alat01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     119004316 (hltf)
Ubiquitin system [BR:alat04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    119004316 (hltf)
DNA repair and recombination proteins [BR:alat03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    119004316 (hltf)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_3 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 RING_XB3-XBAT31 zf-RING_5 ResIII zf-C3HC4_4 zf-ANAPC11 Prok-RING_4 DUF5817 HDA2-3 zf-rbx1 zf-Nse zf-RING_4
Other DBs
NCBI-GeneID: 119004316
NCBI-ProteinID: XP_036927016
LinkDB
Position
16:6814782..6823527
AA seq 973 aa
MFSGRWRFGSDRSSEVDLFTDPHENTTETLLQLLRAAVSPEPEADGSVLFGHLRGTVVGL
RYYTGVVNRGEMVGLVRQPQNQYDRNAVMVANIYGNQVGHIKRELAAAMAYVMDNNLAKV
EGVVPSGTNNSFTMPVMLSFWGKEEHKATVNEFMARRGFKLNTGGSGGATGANQKPYSSM
NQGALALLSKKGLTIPLTAQELRNSFDNLFEGLMESKDGEKEAAKAVGTPLLPHQKQALS
WMCARENKSGLPPFWEKRGELYYNSLTCFSAKEIPERVRGGILADDMGLGKTLTTISLIL
TNFHQGKPLPVQKCEQSSPMKTKTKPHMASKVEGSTSAGAGASDIAASGSLHSDIPQVEM
ISGDSSELVEIVDKPDKSTSKGKMKATKRKPSKEASVFLEDLDFAAALGGSATDTGAKKK
KTTKKATPTISAESSIIESAEDLSARTTLIIAPLSVLSNWLDQFEQHVRPDVKLNVYLYY
GSARNRSKKFLSSQDVVITTYNVLSADFSCKSKSPLHGIDWLRIVLDEGHIIRNPNAQTS
KAVLDLKAQRRWILSGTPIQNSVKDLWMLLAFLRLKPFDVREWWNRVIQRPVTQGDRAGV
QNLQTLVKCITLRRTKTSEVNGRPLVLLPEKTVCVEQVELSRTEREEYELARNEGRNTIR
RYVAEGTVLRNYADVLAILMRLRQHCCHPDLLAKTLSDLGAGATPAELRERLIEKLRLVL
ASGSDEECSVCLDSVQLPVITHCAHVYCRPCIAQVISTEQDTARCPLCRSEIKTSELVEF
PQEEVEEENTPNSEKWRTSSKVQALLGNLLRLRCKDSSIKCLVVSQFTRFLTILETPLRE
HGFTFVRLDGTMSQKKRTQVIQEFQSTAADSPAIMLLSLKAGGVGLNLTAASHVFLMDPA
WNPATEEQCIDRCHRLGQKRKVVVTKFIVKDSVEEKMVEIQRGKQDLVEKAFGSTNSDRK
TSRIDDIKALMEL
NT seq 2922 nt   +upstreamnt  +downstreamnt
atgttttccggcaggtggaggtttggttcggacaggtccagtgaggtggacctcttcaca
gacccccatgaaaacactacggagactctcttacagctcctcagagctgcagtatctccg
gagccagaagccgatggcagcgtgctctttggccacttaagaggcactgtggtcggcctt
agatattacacaggggtggtaaatcgaggggaaatggtcggtttagtgcgacagccccag
aatcagtatgacaggaatgcagtgatggtcgccaacatttatggcaaccaagtaggtcac
atcaagcgggagctggcagcagctatggcctacgtcatggacaacaatttggctaaagta
gagggggtggtgccctctgggacgaacaactcgttcaccatgccagtgatgttgtcattc
tggggcaaagaagagcacaaagcgactgtgaatgaattcatggcacgtcgaggatttaaa
ctgaacacaggtggaagcggaggagcaacaggtgcaaatcagaaaccctatagtagtatg
aatcaaggagcccttgcattgctatcgaaaaaaggtctgacaatcccactgactgcacag
gagctgagaaattcatttgacaaccttttcgaaggcttaatggagagtaaagatggagaa
aaagaagcagccaaggccgttggtactcctctcctgcctcaccagaagcaggcgctatcc
tggatgtgtgctcgagaaaacaaatctgggctgccacccttctgggagaagagaggcgag
ctgtactataacagcctcacatgtttctctgccaaagaaataccggagagagttcgtggg
gggatcctggcagatgacatgggactgggaaaaacattaacgaccatttctctgatcctc
accaactttcaccaaggaaaacctcttcctgtccagaaatgtgagcagtcctcgcccatg
aagaccaaaacaaaaccacacatggcctccaaagttgaaggaagcaccagtgcaggagca
ggagcgagtgatatagcagcatctggttctctgcactcagacattccacaggtggagatg
atttctggtgattcctcagaattagtggagattgtggacaagccagataaaagtacaagc
aaaggaaaaatgaaagccaccaagcgaaagcccagtaaagaggcctcagtatttctggag
gatctggactttgctgcagcgttgggtggctctgcgacagatacaggcgcaaagaagaag
aaaactaccaagaaggccactcccacaatcagtgcggaatcctctatcattgaaagtgca
gaggacttatcagcaagaacgactctcatcatcgccccactgtctgtgctcagcaactgg
ctggaccagtttgagcagcatgtgcgccctgacgtgaagctaaatgtgtatctgtattac
ggctcggctcgcaacaggagcaagaagtttctgtcctctcaggatgtcgtgattaccacc
tacaatgttctcagtgcagacttcagctgcaagagtaagagtccgctccatgggattgat
tggctgagaattgtactggatgaaggacacattataagaaatcccaatgcacagacaagt
aaagctgtgctcgacttaaaagctcagcgccgctggattttgtcaggtacgccaatccag
aacagtgtgaaggacctgtggatgctgctggccttcctgcgtctgaagcccttcgatgtg
agagagtggtggaacagagtgatccagagacctgttactcagggcgacagggccggcgtg
cagaaccttcagaccctggtgaagtgcatcaccctgcggcggaccaagactagcgaggtg
aatgggcgccccctggtgttgcttcctgagaagacagtctgtgtggagcaggtcgagctg
agccggacagaaagagaagagtacgagctggcacgcaatgagggaagaaacaccatccgc
agatacgtagctgaagggacagtcttgaggaattatgctgatgtgttggccatcctgatg
aggcttcgacagcactgctgccacccagacctgctggcaaaaacactctcagatctgggt
gctggagcgacgcctgcagaactgcgggagcgtctgattgagaagctgcggttggtgttg
gccagcggctctgatgaggagtgctctgtgtgtctggactcagtacagctgcccgtcatc
acacactgcgcccatgtttactgccggccctgcattgcccaggttatcagcaccgagcag
gacacagcacgctgtcctctctgtcgaagtgagatcaagaccagtgagctggtggagttt
ccacaggaggaagtggaggaagaaaacactccaaactctgagaagtggaggacaagctca
aaggtgcaggcgctgctgggaaacctgctcaggctgcgatgtaaagatagcagcatcaaa
tgtttggtagtctctcagtttacacgcttcctcaccattctggaaactccactgagagag
catggtttcacattcgtgcgtttggatggcaccatgagccaaaagaagaggactcaggtc
atccaggagtttcagagcactgcagcggacagtcctgccatcatgcttctgtcactcaaa
gcaggaggggtggggcttaacttgacggccgcgtcacatgttttcctcatggaccctgca
tggaatcctgctactgaggagcagtgtattgaccgctgccaccgtttgggacagaagaga
aaagtcgttgtgaccaagttcattgtaaaagactcggtagaggagaagatggtggagatc
cagagggggaagcaggacctggtggagaaggcttttggctccacaaactctgacagaaaa
acatctcgtatcgatgacatcaaggctcttatggagctgtag

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