Acanthopagrus latus (yellowfin seabream): 119004496
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Entry
119004496 CDS
T08233
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03013
Nucleocytoplasmic transport
alat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119004496 (srrm1)
03015 mRNA surveillance pathway
119004496 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119004496 (srrm1)
03041 Spliceosome [BR:
alat03041
]
119004496 (srrm1)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119004496 (srrm1)
Spliceosome [BR:
alat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
119004496 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
119004496
NCBI-ProteinID:
XP_036927345
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All DBs
Position
16:17538898..17549707
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AA seq
863 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGRNAREFMKDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKVDEDKKEKDKDIRERAQSKSPRRRKTRSPSPRRR
SPVKRERKRSASRSPRRKPSPAGGNSPPPPLMQLPTKPLEPLVEPEISGRAMPEPVIQET
PSTCETVVEVVKADSVIEVKEPSPEKIQKKEERPRSREREKDNRRERPHHRSRSHSRSRR
RRSRSRSYSPRRRQSPRRRMSPRRRSPPRRGPVSSRHRHRRSPVRRRRSRSASSSGSSSS
GSRSPKKAMKRISNTPPRKQAHHPDTSISPAGKDRRSPSPRGRRGRGSASPTRSLGLKRK
PGGRSDSPSDNAKPRPSEGSDSEEDKNEKGATADSVQQRRQYRRQNRQSSSDTGSSSSED
EGPKRPNAGPGARNGEVRRRRSRTPSLRRRHRDISPRKRRSPSPGRRRRTPSPPRRRRSP
SPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPLPPQKRRMSSSPAKRSSPGAKRRPSR
SPKRRSSPAQRRRTPPTSSSPPRHRRSPMLPSVRPSRDTRSPNGAASRLSPSPANRSRNV
RGSTSPQGRFETSNSSPSNQRRQQSPSHSGKPIRRVSRTPEPRNNQRPSPSPQPLRRASS
RSRSVSPRPAAQKRPAPASASPSPSRSASGSPPPAKKASSGSGSQSPSKNSDVDGSGKKK
KKKKEKKHKKEKKHKKHKKHKKEKSVPTVTGEGQENPGMEEDGESRKESDSEVEDSLDDL
EKHLREKALRSMRKAQMSPSQMS
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggcacaagtgcagagcaagacaatcggttcagcaacaag
cagaagaaactgctgaagcagctgaaatttgcagaatgtctggacaagaaggtggacatg
accaaagtgaacctggaagtcatcaaaccttggattactcagcgagtgacagagattctt
ggattcgaggatgatgtcgtcatagagttcatatttaaccagctcgaggagaagcacccg
gatagcaagatgatgcagatcaacctgacaggcttcctgaatgggaggaatgcccgggag
ttcatgaaggacttgtggcccctgctgctgagtgcccaggataacattgctggcatccca
tctgcttttctggaacagaagaaagaggaaattaaacagagacagattgaacaggagaag
ctagcttctctgaaaaaagttgatgaggataagaaggaaaaggacaaggacatcagagaa
agggctcagtcaaagagcccaaggaggcggaagacaaggtcaccatcaccacggcggagg
tcgccagtgaagcgggaaaggaaacgcagtgcctcccgatcccctagacgcaaacccagt
ccagctggtggcaattcacccccaccacccttgatgcagttgcccacgaaaccattggag
ccacttgtagagcctgagatatctggaagagccatgccagaaccagtcatccaagaaaca
ccttccacctgtgaaacagttgtggaggtagtgaaggcagactccgtgattgaagtcaaa
gaaccttcaccagagaagattcagaagaaagaggaaaggcctaggtctcgggaaagggaa
aaggacaacaggagggaaagacctcaccaccgctcacgttctcattcccgctctcgcaga
cgacgctctcgttccagatcttactcccctcgtagaagacagagtccaaggaggagaatg
tctcctcgacgaaggagccccccgagacgtggccctgtcagctccagacacaggcataga
cgctccccagtccgcaggaggcgctctcgctctgcttcatcatctggcagcagctcctcc
ggatctcgttcacctaaaaaagctatgaaaagaatatcaaacacaccaccacgaaaacaa
gcccatcatcctgacacctccatcagccctgcagggaaggacagaagatcaccatctcca
cggggcagaagaggccgaggctctgcgtcaccaactagatcactgggtttaaagcgaaaa
ccaggaggaaggagcgactctccatcagataatgccaagcccagaccttctgaagggtct
gactcagaggaggataaaaatgagaaaggggcaacagcagattcggtgcagcagcggcgt
cagtatcgcaggcagaaccgacagtcatcttcagatactgggtcttcctcctcagaagac
gaggggcccaagaggccgaatgcaggaccaggtgccagaaatggtgaggtcaggaggaga
cgaagtcgtaccccctccctacggaggcgacacagggatatctctccaagaaaaagacgc
tctccatctcctggacgcagacgtcgcaccccttctccaccacgtcgtcgcagatctccc
tcgcctcctagacgaaggtctccttctccacctccccgtcgtcgttctccatcccccaga
cgatattctccccctatccagcgtcgctacagcccctcacctttgccgccacagaagagg
aggatgtcaagctctcctgccaaacgctcctctccaggggccaagcgacgtccctctaga
tccccaaagcgcagaagttctcccgctcaaaggagacgcacacctccaacctcctcatct
ccacccagacacaggaggagccccatgttgccttctgtcaggccaagcagggatacacga
tcccccaacggagcagccagccgcctctccccatcacctgcaaaccgcagtcgcaatgtc
aggggttccactagtcctcagggacgttttgagacctccaattcatctccatctaaccag
cggagacaacagtccccttcacacagtggtaaacccatccgcagagtgtcccgcactcca
gagccacgcaataaccagagaccgtctcccagtcctcagcctctgaggagagcatcctca
agatccagatcagtttcccctcgaccagcagctcagaaacgtccagcccctgcatctgcc
tccccatcaccgtcccgctcagccagtgggtctccaccccctgctaaaaaggccagcagt
ggttctggcagtcagtctccaagcaagaattctgatgttgatggcagtggaaagaaaaag
aagaagaagaaggaaaagaaacacaagaaggagaagaaacacaagaagcacaagaagcat
aagaaggagaagagtgttcccactgtgactggagagggacaagaaaacccgggcatggag
gaggatggagagtcaagaaaggaatcagacagtgaagtagaggacagcttggacgacctg
gagaagcacctacgggagaaggcgctgcgctccatgaggaaggcccagatgtctccatca
cagatgtcctga
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