Acanthopagrus latus (yellowfin seabream): 119005791
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Entry
119005791 CDS
T08233
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119005791 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alat03021
]
119005791 (smarcc1a)
03036 Chromosome and associated proteins [BR:
alat03036
]
119005791 (smarcc1a)
Transcription machinery [BR:
alat03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119005791 (smarcc1a)
Chromosome and associated proteins [BR:
alat03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
119005791 (smarcc1a)
PBAF complex
119005791 (smarcc1a)
GBAF(ncBAF) complex
119005791 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT
BRCT_2
Chromo
Motif
Other DBs
NCBI-GeneID:
119005791
NCBI-ProteinID:
XP_036929647
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All DBs
Position
17:28377785..28400326
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AA seq
1125 aa
AA seq
DB search
MATAATTAGGTGSGGPATGPVGSGTAVGRKKDGGPSSKFWESSETVSQFETVRLWIGKHY
KKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKAGGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPIVFLSPDIEQKQASK
LKDIIKRHQGSITDDKSKATHHIYPSPSQQEEEEWLRPVMRKDKQVLVHWGLSPDSYDTW
VSASEVDGDVEDPPSTDRPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKPVSFRQKIFPK
EEESSRTPDRKERKANSTGKKRRRSPSPPSTPAESRKKGGKKGNPGLHWKRRGHRGEEED
TEEDMTKDMDDSSAGASMEEGSMSKNSKKDNENTPVKGGNGDMDDMEDDSVLSGGKDDEE
QGKAEINRLIDAGEDNVTEQTHHIIIPSYSAWFDYNCIHEIERRALPEFFNGKNKSKTPE
IYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDADSRP
LPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPPQQMPGFIDKSKEKSIDLQNFGLRTDF
YNRKNPKGKAPTSTREWTEQETLLLLEALEMFKDDWNKVSEHIGSRTQDECILHFLRLPI
EDPYLENTETTLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEFSRVR
EEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTETPEAEKMDTDTD
SQQADKAESKDEAEKPSESAEKSSDKTEAADKVKKEGGEASEREDDNEDGVEAKSSPADK
DKEDAMETSSSEQEKEKEEKATTEEGEEKRKKLEHDIEEGNIATAAAAALASAATKAKHL
AAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHM
EQLKYAEMKARQQMEQQAAAAAAAAAHAQGQGQAPGSGPHSGAPPPGMHPGGPQPHHGAP
VPHHGGPPPGGAMHPVYPPMGHHPMAPHHPGQTGPMGPGQPIPGRMMPGPPSAGPPPGGM
PPMMPPRHPGAPNGMYPGPPPAQPEAVPPVPVAPPAAPSARVPDN
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcaggcggaacgggctccggtggaccggccaccggcccg
gtgggcagcggaaccgcagtgggacgtaaaaaggatggcggtccgtcctcgaaattttgg
gagagttcagaaacggtgtcccagtttgagacggtgcggctgtggatcggaaagcactac
aagaagtatgtccagaatgactccccctccagtaaatccttggcgggtctggtggtccaa
ctgctgcagttccaggaggatgcatttggacgcagggtcaacaatcctgctcttacaaag
ctacctgccaagtgtttcctggattttaaggcagggggtgccctgtgtcacatcttggga
tcagtctacaagttcaagagcgagcaggggtggcgcaggtttgacctgcagaatccttcc
aggatggacaggaacgttgaaatgttcctaaacgtggagaagaatttggttcagaataac
tgcttgactcgacccatcgtcttcctgtcgccagacatcgagcagaaacaagccagtaag
ctcaaagacatcatcaaaaggcaccagggctctatcactgatgataagtcaaaggccact
caccacatttatccctctccatcccaacaggaggaagaagagtggcttcgtcctgtcatg
aggaaagacaagcaggtgctggtgcactggggtctctccccagacagctatgatacttgg
gtgtcagccagcgaggtggacggggatgtggaggacccacccagcactgacagaccatgg
aaggtccatgccaagtgggttttagacactgatgccttcaatgagtggatgaatgaagaa
gactacgaggtggatgagaacaagaagccagtcagcttccgtcagaaaatcttccccaag
gaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggccaactccaccggcaag
aagaggaggcgctcgccctcgccgcccagcactcccgccgaatcccgcaagaagggagga
aagaaggggaaccctgggcttcactggaagcgacggggccacagaggtgaagaggaggac
acagaggaagacatgaccaaggacatggacgactcctcagccggtgccagcatggaggag
ggcagcatgtctaagaattcaaagaaagacaatgagaatactccagtgaaaggaggaaat
ggagacatggatgacatggaggatgactctgtgctgtctggtggaaaggatgacgaggag
cagggcaaagctgaaatcaaccgactgatagatgctggcgaggacaacgtgactgaacag
actcaccacatcatcatccccagctacagcgcttggttcgactacaactgcatccatgag
attgagagaagagcgctgcccgaattcttcaacggaaagaacaagtccaaaactcctgag
atatacctggcctaccgtaacttcatgatcgacacttatcggctaaaccctcaggagtac
ctcacctccacctcctgtcgccggaacttgaccggggatgtttgtgctatcatgagggtt
catgcgttcttggagcagtggggtttggtgaactaccaggttgacgctgacagtcgcccg
ttgcccatgggccccccacccacacctcacttcaccgttctggctgacacaccatccggc
ctcatgcccctgaaccaccgacccccgccgattccccctccgcagcaaatgccgggcttc
atagacaaaagcaaagagaagtccatcgacttgcagaacttcggccttcgcactgacttc
tacaacaggaaaaaccccaagggtaaagctcccacctccaccagggaatggaccgagcag
gagactctactgctgctggaggcgctggagatgttcaaagatgactggaacaaagtgtct
gagcacatagggtcacgcactcaggacgagtgtatcctgcacttcctgcggttgcccatt
gaggatccatacctggagaacactgagacgaccctgggccccctggcctaccagcctata
cccttcagccagtctggaaaccccgtcatgagcactgtagccttcctggcctctgtggtc
gaccccagagtggcatcagctgctgccagggcagccttagaggagttctcccgtgtgcgt
gaggaggtgccggctgagctggtggaggctcacgtgaagaaagtgcaggaggcggccagg
agcacggggaaggtggacccagcgttcggcctggagagcagtggcatcgctggtaccgcc
ccagaggagccagagaagaccgaaaccccagaggcagagaagatggacacggacacagac
tctcagcaggccgataaggcggagtcgaaggacgaggcggagaaacccagtgagtctgca
gaaaagagcagcgacaagactgaggccgcagacaaggtgaagaaggagggaggagaggcg
tcagagcgcgaggacgacaacgaagatggagtggaggccaagtcctctccagcagacaaa
gacaaggaggatgccatggagacatcgtcctcggagcaggagaaggagaaggaggagaag
gcaactacggaggagggagaggagaagaggaagaaactggagcatgacattgaagagggt
aacattgccaccgcggccgctgctgccctggcatctgctgccaccaaggccaagcatctg
gcggcggtggaggagagaaagatcaagtccctggtggctctgctggtggagacccagatg
aagaagctggagatcaaactgaggcacttcgaggaacttgagaccatcatggaccgagag
aaagaggccttggagcttcagcggcagcagctgctcaccgagcgtcaggccttccacatg
gagcagctcaaatacgcagagatgaaggcgaggcagcagatggagcagcaagctgccgct
gcagccgccgctgccgcccatgctcaaggacagggtcaggcccctggatctggaccccac
tctggagcccctccaccaggcatgcaccctggagggccccagccacaccacggagcacca
gttccccaccacggagggcctccacccggtggtgccatgcaccccgtttaccccccgatg
ggtcaccaccccatggcccctcaccacccaggacagacaggaccgatgggaccaggacag
ccgatccctggacgcatgatgcccggcccaccctcagctggcccccctcctggcggcatg
cctcccatgatgcccccacgccaccctggagctcccaacggcatgtatcccggcccacca
cctgcacagcctgaggcggtacctccagttcctgtggctcctccggcggctccgagtgct
cgagtgcctgacaactaa
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integrated database retrieval system
