Acanthopagrus latus (yellowfin seabream): 119006441
Help
Entry
119006441 CDS
T08233
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119006441 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alat03041
]
119006441 (dhx16)
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119006441 (dhx16)
Spliceosome [BR:
alat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119006441 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
Flavi_DEAD
PWI
ABC_tran
Motif
Other DBs
NCBI-GeneID:
119006441
NCBI-ProteinID:
XP_036931060
LinkDB
All DBs
Position
17:25516342..25530630
Genome browser
AA seq
1051 aa
AA seq
DB search
MASLEQWVNDRLHDILGLSDRYVSQFMIGTARKASSSQDLVHRLEQTGTIDIDQNVIAFA
EELFNKIPRKQVVEKPARAMEREAIEMDRRNRTYTLLEDSESDEDTVTEKQKGKKKSKDK
DKGNKRKHIRQKKESESSSEEEAPKRGNSDHKSDKKVEEEEEEWEKEERERQQDIEERDA
FAERVKQKDKDKTRNITERTDKKAYEEAQKRLKLAEDDQKNMLPELRKHSRWDYLKKRES
EKLEDLEAEIHDDEYLFSMDELTEREKKELEYKRTLRDLAKDYKKAGAKEQEERKNRYYM
PEEKRSKEVPQRDLELEETPMELGGEQGRWEEERLKTASLSFGAKREREQGMRREQEKYE
LILEEDEMIDFVSTAITMKGTRAEKDQEAPALSQAELNKKSMQEVRRSLPIFPYREDLLA
AIQEHQILVIEGETGSGKTTQIPQYLLEDGYTQGGMKIGCTQPRRVAAMSVAARVAQEMS
VKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVVIIDEAHERTLHTD
ILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPEAD
YLEACVVSVLQIHVTQPPGDCLVFLTGQEEIEACCEMLQERCRRLGSKIAELLVLPIYAN
LPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLI
VTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLKSL
GINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILA
SEQYKCSNEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYTQWVE
SGYSTQWCYENFIQFRSMRRARDVRDQLEGLMDRIEVEVVSSNGDNLPIRKAVTAGYFYH
TARLSKGGYKTVKHQQTVYVHPNSCLFEEQPRWLIYHELVFTTKEFMRQVIEIESGWLLE
VAPHYYKSKELEDSSSKKMPRKQGKTKEELG
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggccagtctagagcagtgggtgaacgaccgtctccatgacatcctcgggttgagtgac
agatatgtctcccaattcatgatcggcactgcacggaaagcatcgagttctcaggactta
gtgcatcgtctcgagcagacgggcacgattgacattgaccaaaatgtgattgcctttgca
gaggagctctttaataagattcctcgcaagcaggttgttgagaaaccggcgcgggcgatg
gagcgggaagccattgaaatggacaggaggaatcggacgtacacattattggaagacagc
gaaagtgatgaagacactgtgacggagaagcagaaagggaaaaagaaaagcaaagacaag
gacaaaggaaacaagaggaagcacatcagacagaagaaagagagcgagtcatcaagtgag
gaagaagcacctaaaaggggtaattcagaccacaagtctgacaagaaagttgaggaggaa
gaggaagagtgggagaaggaagagcgagagcgacagcaggacatcgaagagagggacgct
tttgctgagcgagtgaagcagaaagacaaagacaagacccgtaacataaccgagaggact
gacaaaaaggcttatgaagaagctcagaagagactgaagttggctgaagatgatcagaag
aatatgctgccagagttgaggaagcactctcgatgggattatctaaagaagcgagagtca
gagaagttggaggacctggaggcagagatccatgacgatgagtaccttttctcgatggat
gagctcactgagagggagaaaaaggagttggaatacaaacgcacccttcgggacctggct
aaagattacaaaaaggccggtgcaaaggaacaggaggagaggaagaacaggtactacatg
ccggaagagaagagaagcaaggaggtgccccagagggacctggagctggaggaaactccc
atggagctgggaggagagcaaggccgctgggaggaggagaggctgaagacggcctctctc
agcttcggggccaaaagggagcgagagcaaggcatgaggcgcgagcaggagaagtacgag
ctgatcctggaggaggatgagatgatcgactttgtcagcaccgccattaccatgaaggga
actcgggcggaaaaagatcaggaggccccagctctgtcccaggcggagctgaacaaaaag
tccatgcaggaggtacgacgcagccttcccatcttcccctacagagaggacctgctggcg
gccatccaggagcaccagatccttgtcattgagggggagaccggctccggaaagaccacc
cagattccacagtacctcttagaagatggctacactcaaggcggcatgaagatcggatgt
acacagcctcgcagagtggcagccatgtcagtcgcagccagagtggcacaggaaatgagt
gtcaagcttgggaatgaggtgggatacagtattcgttttgaggactgcacgtcagagaga
actgtgctcaagtacatgacagacggcatgctgctcagagagtttctcacagagcccgac
ctggccagctacagtgtggtcatcatagatgaggcccacgagcgaacgcttcacacagac
atcttgtttggtctgattaaggatatcgccaggttcagaccggacctgaaggtgctggtg
gccagcgccactctggacacagaacgtttctcctgcttctttgacgacgcgcctgtcttc
aggatccccggcaggaggttccctgtcgatattttctacacaaaagctccggaggctgac
tacctggaagcttgtgtggtgtcggtgctgcagatccacgtcacccagcctcctggagac
tgtctggtcttcctcactggacaggaggagatcgaagcgtgctgcgagatgctccaggag
cgatgcaggcggctcggatcaaagatagccgagctgctggtcctccctatttacgccaac
ctgccatcagacatgcaggcgaagatcttcaacccaactccccccggagcccgtaaggtg
gtggtggctaccaatatagcagaaacctcactgaccatagatggcatcatctacgtcatt
gacccaggcttctgcaaacagaagagttacaacgcccgcaccggcatggagtcactcatc
gtcacgccctgctcacgggcttcagctaaccagagggcaggccgtgctggcagagtggct
gctgggaaatgtttcaggctttacacagcctgggcctttaaacacgagatggaagaaacc
actgtccctgagattcagaggaccaacttgggaaatgtagtccttctgctgaagagttta
ggcatcaacgacctgattcactttgacttcatggacccacctcctcatgagactctggtc
ttggcgctggagcagctgtacgccctgggagcacttaaccacctgggagagctcaccaag
ctgggtcgcaggatggctgagctaccggtggacccgatgctgagcaagatgatcctggcc
tccgagcaatacaagtgttcgaatgaagtgttgacgatagcggccatgctgtcggtgaac
aactctatcttctaccggcccaaagacaaggtggtgcacgccgacaacgccagaatgaac
tttgtggtgccagggggagaccacctggtgctgctcaacgtctacacacagtgggtggag
agtggttactccacacagtggtgctatgagaacttcatccagttccgctccatgagaaga
gcccgggatgtcagggaccagctggagggtctgatggatcgtattgaggtggaggtggtc
agcagcaatggagacaacttgcccattcgtaaggcggtgacggcaggatatttctatcac
acggcgcgactgagcaaaggcggctacaagaccgtgaagcaccagcagacggtctacgtc
caccccaacagctgtctgttcgaggagcagccccgctggctcatctaccacgagctggtc
ttcaccaccaaggagttcatgagacaggtgatcgagatagagagcggctggctgcttgaa
gtggcaccgcactactacaagagcaaagagctggaggacagcagcagcaagaagatgccc
cgcaagcagggcaaaacaaaagaggagctgggctga
DBGET
integrated database retrieval system
