Acanthopagrus latus (yellowfin seabream): 119006988
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Entry
119006988 CDS
T08233
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03013
Nucleocytoplasmic transport
alat03015
mRNA surveillance pathway
alat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119006988
09122 Translation
03013 Nucleocytoplasmic transport
119006988
03015 mRNA surveillance pathway
119006988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119006988
03041 Spliceosome [BR:
alat03041
]
119006988
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
119006988
Spliceosome [BR:
alat03041
]
Common components
Common spliceosomal components
Cap binding complex
119006988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
RRN3
DUF1690
Importin_rep_6
Vfa1
AAA_11
CC_BshC
DUF2524
FapA
Exonuc_VII_L
OmpH
HSP70
Motif
Other DBs
NCBI-GeneID:
119006988
NCBI-ProteinID:
XP_036932098
LinkDB
All DBs
Position
18:complement(5314392..5323329)
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AA seq
795 aa
AA seq
DB search
MSRRRHSDENDGGQAHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCSVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKNNL
YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYVVLSCLPWV
GKELYEKKDVEIDRLLSQIEGYLKGRVKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPGHMPDAQYPMPRVVFRMFDYTDAPEG
PVMPGSHSVERFVIEENLHCIIKTHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPIPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCIDRLINWFAHH
LSNFQFRWSWDDWSDCLTVDLDKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFSALIPAE
PVFIYKYEDESASSLPGYPVSVAVGNAIKNRASNEEILTVLKDVPNPNQEDDDDEGETFN
PLKVDVFLQTLLHLAAKSFSHSFSALGKFHEILKNLTESDEGKLHILKVVYDVWRNHPQM
IAVLVDKMIRTQIVDCAAVANWLFSQDMAHEFTRLFIWEILHSTIRKMDKHVQKIQQELE
EAKDKLEKQQHKRRDSGDDEDMDKASEDEEGQLEEQIERLQEKVESAQSEQKNLFLVIFQ
RFIMLLTEHLVRCETGSVDISTPWYKNCIERLQQIFLMHHVTIQQYMGTLENLLFTAELD
PHILAVYQQFCALQL
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggaggcgccacagcgacgagaatgacggaggtcaggcccacaagaggagaaga
acatcggagcccattgaaattgaagaccggctggagtcactgatatgtcgtgtgggggag
aagagtacatcatccctggagagcaacttggagggccttgcaggcgtgttggaggctgac
cttccgaactacaaaaacaaaatcctgcgtattttatgttctgtcgcccgcctcctacct
gagaagctgactgtgtatacaaccttagtcggccttctgaatgcgaggaactacaacttc
gggggcgagtttgtggaggccatgatcaggcaactcaaggagacactgaagaacaacttg
tacaatgaggctgtttacttggtgcgttttctgtctgacttggtcaactgccatgtgatc
gctgctccttcaatggtggccatgtttgaaaactttgtcagtgttactcaagaggaggat
gtaccacaggttcggtcggactggtttgtgtatgtggtgctgtcctgtctgccctgggtc
ggtaaggagctttacgagaagaaggatgttgagatagaccgacttctcagccagatcgaa
ggctacctcaaggggcgagtaaagacgcatgtccccatgctgcaggtgtggacagcggag
aagccccacccacaagaggagtacctggactgcctctgggctcagattcagaagctaaag
aaagaccgctggcaggagcgccacatccttcgtccgtacatcgcctttgacagtgtgctc
tgtgaggccctgcagcacaaccttccccccttcaccccaccgggccacatgcccgacgcc
cagtaccccatgccccgggttgttttccgcatgttcgactacaccgacgcccctgagggc
cccgttatgcccggcagccattctgtggagagatttgtcatagaagaaaacctgcactgt
atcatcaagactcactggaaagagaggaaaacatgtgcagctcagttactgagctatcca
gggaaaaataagatcccgctcaactatcacattgtggaggtgatctttggagaacttttc
cagctgcccattccgcctcacatcgacgtcatgtacaccacactgcttattgagctctgc
aaactgcagcccgggtctttgccacaagttttggcccaagccacagagatgctttacatg
agactggacaccatgaacaccacctgcatagacagactaatcaactggtttgcccaccac
ttgagcaacttccaatttcgatggagctgggatgactggtccgactgcttgaccgttgat
ctcgacaagcccaagcccaagtttgtcaaagaggttctggagaagtgtatgagactctcg
taccatcagcggatagtggacatcgtccctccaaccttctcagcactcatcccagctgaa
cctgtctttatctacaaatacgaagatgagagcgcttcttcgttaccaggttacccggtg
tccgtcgctgtcgggaacgccatcaagaaccgagcgtccaacgaagagatcctgaccgtc
ctcaaagatgtgcccaaccccaaccaagaagatgatgatgatgagggggagactttcaac
cccctgaaggtcgatgtgttcctgcagacgctgctccatctggctgccaaatccttcagt
cactccttcagtgccctcggaaaattccatgagatcctgaagaacctgacagaaagtgac
gagggcaaactgcacatcctcaaggtggtttatgacgtgtggaggaatcacccgcagatg
atcgcagtgttggtggacaaaatgattcggacgcagattgttgactgtgccgctgttgct
aactggctcttctctcaagatatggctcatgagttcaccagacttttcatctgggagatt
ctgcactcgaccatccggaagatggataaacatgtgcagaagatccagcaggagttggag
gaggccaaggataaactggaaaaacagcagcacaagaggagggacagcggcgacgatgaa
gacatggacaaggccagcgaagatgaggagggtcagttggaggagcagatcgagaggcta
caggagaaggtggagtcggctcagagcgaacagaagaacctcttcctcgtcatcttccag
cgtttcattatgttgttgacggagcatctggttcgctgtgagacgggcagcgtcgacatc
agcacgccgtggtacaaaaactgcatcgagcggcttcagcagatctttctcatgcaccat
gtgaccatccagcagtacatggggaccctggagaacctgctgttcactgcagagcttgac
cctcacatcctggccgtctaccagcagttctgtgccctgcaactctga
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