Acanthopagrus latus (yellowfin seabream): 119007079
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Entry
119007079 CDS
T08233
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6a
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119007079 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119007079 (cnot6a)
Enzymes [BR:
alat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
119007079 (cnot6a)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119007079 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119007079 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
119007079
NCBI-ProteinID:
XP_036932329
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All DBs
Position
18:complement(19200600..19215108)
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AA seq
559 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSTALWSLTHLTALHLSD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLNYLLDNLAGAIKRIPTEQPPARSWISLQDP
DRTWPSALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKNIMQEIMGCNADIISLQE
VETEQYYNFFLPELKEQGYDGFFSPKSRARTMSEVDRKHVDGCAIFYKTEKFSAVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMEVSSGKTLHGMEKQLILIANA
HMHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGETNAIPLVLCADLNSLPDS
GVVEYLSSGGVDCTHKDFKELRYSDCLTKFNCNGKNSSSNGMITHGFKLKSAYENGLMPY
TNYTFDFKGVIDYIFYSKPHLNVLGILGPLDPHWLVENNVSGCPHPHIPSDHFSLFAQLE
LLLFNVPPQINGLHMPSRR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgatccgccggatcccaggcggatgtacacaattatgtcgagc
gaggaggcagcaaacgggaagaagtcatactgggctgagctggaaatcagcggccgagta
aggagtctcagcacagccctgtggtctctcacccacctcactgccctgcacctcagtgac
aactcactgtcacgcatcccgccagacattgccaaactacacaacctggtgtacctggat
ctctcatccaataagatcaggagcctgccggcagagctcggcaacatggtgtctctcagg
gaactgcttttaaataacaaccagttgcgggttctgccatttgaattggggaaactgttt
cagttacaaacactggggttgaaaggaaacccacttgcacaagaaattatgagcctctac
caggaacctgatggaacgcgaagactgctcaactacttgttagacaatctggcaggggct
atcaaacgcataccaacagagcagcccccagctcggtcatggatctcactccaggaccca
gaccggacatggccctcagcactgttctctgtgatgtgctacaatgtactgtgtgataag
tacgccacacgacagctatatggctactgcccctcttgggctctaaactgggagtacagg
aaaaaaaacatcatgcaggagattatgggctgcaatgcagatatcatcagtttgcaggag
gttgagacggagcagtactacaatttcttcttgcctgagctgaaggagcagggatatgac
gggttcttcagtccaaagtcacgagccaggacgatgtcggaggtggatcgtaaacacgtg
gacggctgtgcaattttctacaagacagaaaagttcagcgcggtgcagaaacacacagtg
gagttcaaccagctggcgatggctaactccgagggctcagaggccatgctgaacagggtg
atgaccaaggacaacatcggagtagctgtactgctcgaggtccgcaaagagatgatggaa
gtctcctctggaaagacactccacggcatggagaagcagctgatcctgatcgcaaatgcc
cacatgcactgggacccagagtactctgacgtcaagctggtccagacaatgatgttcctg
tcagaggtgaagaacatagtggacaaggccacacgcagcctcaagttgtcctccgtctct
ggtgagactaatgccattccactggtgctgtgcgctgacctcaactccttgcctgactcc
ggcgtggtggagtaccttagctctggtggagtagactgcacccacaaggacttcaaggag
cttcgttatagtgactgtctgaccaaattcaactgcaacggcaagaacagttcgtccaac
ggcatgatcacccacggcttcaagctgaagagcgcttacgagaacggcctgatgccttac
accaactacaccttcgacttcaagggtgtcatcgactatattttctactccaagcctcac
ctgaacgtgctgggcatcttgggccccctggacccccactggctcgttgagaacaatgtc
agcggctgcccacatccccacatcccctccgaccacttctccctcttcgcccagctggag
ctgctcctcttcaacgtgcccccccagatcaatgggctccatatgccttcacgtaggtag
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