Acanthopagrus latus (yellowfin seabream): 119007232
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Entry
119007232 CDS
T08233
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04010
MAPK signaling pathway
alat04210
Apoptosis
alat04218
Cellular senescence
alat04620
Toll-like receptor signaling pathway
alat04621
NOD-like receptor signaling pathway
alat04622
RIG-I-like receptor signaling pathway
alat04623
Cytosolic DNA-sensing pathway
alat04625
C-type lectin receptor signaling pathway
alat04920
Adipocytokine signaling pathway
alat05132
Salmonella infection
alat05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119007232 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
119007232 (nfkb1)
04218 Cellular senescence
119007232 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
119007232 (nfkb1)
04621 NOD-like receptor signaling pathway
119007232 (nfkb1)
04622 RIG-I-like receptor signaling pathway
119007232 (nfkb1)
04623 Cytosolic DNA-sensing pathway
119007232 (nfkb1)
04625 C-type lectin receptor signaling pathway
119007232 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
119007232 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
119007232 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
119007232 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
alat03000
]
119007232 (nfkb1)
Transcription factors [BR:
alat03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
119007232 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_5
Ank_3
Ank_4
Death
Motif
Other DBs
NCBI-GeneID:
119007232
NCBI-ProteinID:
XP_036932647
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All DBs
Position
18:complement(1687601..1738412)
Genome browser
AA seq
942 aa
AA seq
DB search
MAGDDPYLHTTNQILMEMMDPTPWEFTPFPVMSQTSMRTVSADGPYLQIVEQPKQRGFRF
RYGCEGPSHGGLPGASSEKNRKTYPTVKISNYQGPARVVVQLVTAVTPHPQLHAHSLVGK
QCDKGICIADLQPKDSNISFPNLGILHVTKKNVAKTLEERMVEAFRMGYNCGVSIHPDID
GLQGEVRVPRDLTDHQRSVISSAAALQAKEMDLSVVRLMFTAFLPDSDGGFSRRLEPAVS
EPIYDSKAPNASNLKIVRMDRTAGCVSGGEEVYLLCDKVQKDDIQVRFFEEDDTGLTWEA
LGDFSPTDVHRQFAIVFKTPKYRDQNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDK
EEVQRKRQKTLPTFHDFSGHGGGGGGGLYRGGGGGPAAGGPGSAGGGGGGGGAYFQGFTT
YNYGGGGGGGGGGFSTGYSAGLGGGGGGIKHASQSEAADDSSDDDSDPDDDSGSGVTLRS
SAQRGDLEVEERTEKEGVSVEPHTDERSVEESSRQLEALFKYSVTGDSAYLLATQRQLMD
AQDEDGDTGIHLAVLHSQQEALKSLTQVVSALPGQDVLNMRNHLYQTPLHLAVITQQREA
VEALLLAGADPTLTDRHGNTVLHLASKLEGGGGMVQFLLQHKELRALLEHTNTAGLCAIH
LAVLANQLSSLRELLEGGANVETPERSCGRTALHLATESDNVSLAGCLLLEGNANVDCLT
FNGSTPLHIAAGRGSIKLTALLMAAGADPHKENFEPLFFREEDCCDEEREEEDEDEGYIP
GTTPLSMAASTQVLELLNGKEYEPKSPHRPLSPPPGDLVSLDVEVKQQLCGALESEGCWE
SLAHSLGLGILNTAFRLSPSPAKTLLDSYEVSGGTVSDLLAGLRSVGECEALGVLEEALR
HRDVQETKTTNERRGGSQVQDLKADVQIDSGVCDSGVELSTA
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggctggagacgacccctaccttcatactactaaccagattctgatggagatgatggat
cccacaccatgggagttcacaccctttcctgtaatgtctcagacgtccatgcggacagtt
tcagctgacggaccgtacctacagattgtggagcagcccaaacagcgtggcttcaggttc
aggtacggctgtgagggtccgtctcacggtggtctacctggcgcctccagtgagaagaac
agaaagacctaccccactgtcaagatcagtaactaccagggtccagcccgtgtagtggtg
cagctggtgacggcagtgacgccccaccctcagctccatgctcacagtctggtggggaaa
cagtgtgacaaagggatctgcatcgccgacctgcagcccaaagactccaacatcagtttt
ccaaatctgggcatcctccatgtgacgaagaagaacgtggcgaagactctggaggagaga
atggtggaagccttcaggatgggatacaattgtggagtctccatacaccccgatattgac
gggctgcaaggagaagtccgcgtcccccgagacctcactgaccaccagcgcagtgtaatc
agcagtgcggcggcacttcaggctaaagaaatggacctcagtgtggttcggctcatgttc
actgcgttcctccctgacagcgatggaggtttctccagacgactcgagcctgctgtgtct
gaaccaatctacgacagcaaggctccaaacgcctccaacctgaagatcgtgaggatggat
cgaactgctggctgtgtaagcggaggagaggaggtctacctgctctgtgacaaagtccag
aaagatgatatccaggttcgtttctttgaagaagacgatacggggttgacttgggaggct
ctgggagatttttccccgacagacgttcacagacagttcgccatcgtgttcaagactcca
aagtatcgagaccagaacctgcagaagccgacgtcggtgtttgtccagctgaagaggaag
tctgacaacgagacgagcgagccaaaacccttcacctaccacccccagatcatagacaag
gaggaggtgcagaggaagagacagaagacattaccaactttccatgacttcagtggtcat
ggtggaggaggaggaggaggtctgtaccgaggtgggggaggaggtccagcagcaggagga
cccggctctgcaggaggaggaggaggaggaggaggagcgtacttccagggcttcaccacc
tacaactatggaggaggaggaggaggaggtggtggaggtttctccacaggatactcagct
ggtctgggaggtggaggaggcggcatcaaacacgcctctcagagtgaagcagcagatgac
agcagtgacgatgacagcgatccagatgatgactcggggtcaggggtcacactgagatct
tcagcccagcgaggagacctagaggtggaggagaggactgagaaggaaggggtcagtgtg
gagcctcatacagatgagcggtcggttgaggagagcagcagacagctggaggcgctgttt
aagtactcagttacaggagactcggcctaccttctggccacacagcgccaactgatggac
gcacaggacgaggacggagacactgggatccacctggcagttctacacagccagcaggaa
gcgctgaagagtctgactcaggttgtctctgctctgcctggacaggatgttctcaacatg
aggaaccacctctaccagactcctttgcacctggcggtaatcacccagcagcgggaggca
gtggaagcactgctgctggccggtgctgacccgacactgacagatcgtcatggcaacacc
gtgctccacctggcatccaagctggaaggaggaggaggaatggtccagtttttactgcag
cacaaagagctgagagcactgctggaacacaccaacacagcaggtctgtgtgcgatccac
ctggcagttctggccaatcagctgtcttctctcagggagctgctggagggcggagctaat
gtagagacaccggagcgcagctgtggacggaccgccctccacctcgccaccgagagtgac
aacgtgtcactggctggctgcctgctgctggagggaaacgccaacgtggactgcttaacc
ttcaatggctccacccccctccacattgccgcaggacggggttccatcaagctaacggct
cttctgatggctgcaggtgcagaccctcataaggagaactttgagccgctgttctttagg
gaggaggactgctgtgatgaagagagggaggaagaggatgaagatgaaggctacatccca
ggaactactccactcagcatggccgccagcactcaggtgttggagcttctgaatggtaaa
gaatatgaaccaaagtctccacacagaccgctgtctcctcctccgggtgacctggtgagt
ctggacgtggaggtgaagcagcagctgtgtggcgctctggagagtgaaggatgctgggag
agtctggctcacagtctgggtctgggcatcctcaacacggccttcagactgagcccctcc
ccagccaagacactgctggacagctacgaggtttcaggtgggacggtctctgacctgttg
gctggactgaggtccgttggagagtgcgaagcacttggcgtcctggaggaggcactacgt
caccgcgacgtccaggagacaaagacgaccaatgagaggagaggagggtctcaggttcag
gacctgaaggctgatgtccagatcgacagcggggtgtgtgacagcggggtggagctctcc
acggcgtga
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