Acanthopagrus latus (yellowfin seabream): 119007370
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Entry
119007370 CDS
T08233
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
119007370 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
alat04121
]
119007370 (slx4)
03400 DNA repair and recombination proteins [BR:
alat03400
]
119007370 (slx4)
Ubiquitin system [BR:
alat04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
119007370 (slx4)
DNA repair and recombination proteins [BR:
alat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
119007370 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
zf-met
zf-C2H2
zf-C2H2_6
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
119007370
NCBI-ProteinID:
XP_036932940
LinkDB
All DBs
Position
1:complement(21935885..21947975)
Genome browser
AA seq
1759 aa
AA seq
DB search
MDDSDQDFVDLCSKLLKRVRKKPGEPSQPRRAEPQQQQPSSQSSDGDKRKRNKKRDDDYG
PKGVGAQPVGTGAGAEQHGVRGGTGSDSGDAGSSGVPRAERAKDKVLQRMQQFKRASPQR
MVHKDKSQTTSHEIPSTSPPPPLEQRQDTPQSLSSGLHLEPQDSDEAMALRLQQELNRET
TGVQTVDLEDGGLFFCQICQRDLSHMTPEGRTQHLNRCLDESEGSAPPLLPPPSSSGVPD
CPICGKKFKSQKSRSTHLKRCSSDMGVPPAVLLQALQRQAEDTQNVPSANTLTETGGTKR
KGPPGPGLLARKKPRKKTEPLDEDTMVALALSSSLLERERESERALQTETAASHISMAPV
LKWRPDRGQGRGRRKKGAVPRPPPLLLVQDAAAALVRLQERVSALLLRSRAPSPPSPTLS
PSTLPGRCGAAPLWQKSTLLDGGSTCVSDFYTPELRGFITPWDPAATESASSSTFSKSAV
QPVSEGTPVTETRASILPSSSQTAASSPAPSTPGTGQLSVGSQTLRDLMELAEDGMTLTQ
RGYTASNPDGEKSTTMTTNLHLSGFIPEASEERADLCASGFLPEMTRTRLDETHRRTRGA
TDQPQPDKDRGGHRSVALSRLASDLSSMVNNPQFSDVQLQVDSGEVYFAHSFMVYARCPL
LAEMVHESGIGVQEEGMPAAQRVLISDVPEQAVFSLLQYLYTAKCSIPASLRPHVLELAS
RFDLQELQQLCKVCQEDAATQGEEDDYMNQEENVSNHTDQAFVELLRSMWNEEDEDNRGT
DTDEGSGEERGSEEDRQADDLAAGDREIGEEKVNEEELEEIYEFAATQRKKEEEEDSMKE
EEEEVKVDEEEDGEEVFAQLAESEPISAEPNPLPQPDRSLDRSYNRLFSDSWGVYEEGDP
PSRPSTSGQPRTRALQTPLSSHKLSSELSGRTLLQSSASVVNDLSPSPPPSASNLPIPGQ
SPGQEGDRGTDAADQVVSKEGNTLRRESRSPHTLSLSTDSPEKKREPELIVLSDSSEDME
VVLSSRSPSPHSPCANQNPRSYTQIKSPPVKPNKPSQENEKSSSLESSPERAGPADCSAE
VSWLIPSTPLQHRHSSTTTTSSTQTRSSMCRTQLFPKVDTSSPSAFSSPACGGPTEGSVP
WIKQEEMLPCSSSFNLNLSPKRSSSSDVSKVKEVFAVPSSQSKRLSLTSSKQYTPLHPQL
QPYSSTPLHTELHQPPVPLTTSPLARQRPPSRGRDSLASDGPEKTELGSFHLSPLSDPSD
PPSSSSNRRLQSSERHSDSSPQSRRSNELRSRDELSRGTRDDEGERELQFENKETCEEGE
LEEAGVADIAESSFQQSFMAMDEPPIAFNDSWGLDVCAEANPGCFSLRLEDSVGSSQHEN
SSGRREPARSSSSTDQSVRSSKSHSSATVPSPSKAHSTHPSTSVQAHPGPPFTPSPPDPT
IQTSPGINNSLLDPKIWDSWEEEEEGEALPLSQRVNTCAQLKTPASSRNKRRRTLVPITP
MPHYSDLDTPELKNKLNRFGVRPLPKRQMILKLKEIHQYTHQLVSSDEEEEEEEEVVSSV
GRTAQVKPPPSSSVSAGNRPLSCTQTVRFKEPRAPADASPLRHNMEEEENELLSASQGSN
TSSTAASEESERSNPVLCLSSDANSDSDGGISSSQAATRLQDRLRAVRSFILSDSELYTQ
ILQYQPLVLSQLQGRLKAAGIRLGTTKLVDYLDSQCITFTTAKPGQSAPGRRRVKRTGRG
AKAAGESGASRNRGVPAVF
NT seq
5280 nt
NT seq
+upstream
nt +downstream
nt
atggatgactcggaccaggattttgttgatctctgctccaagctgctgaaacgagtccgc
aagaaaccaggtgagcccagtcagccgaggagagccgagccgcagcagcagcagccttcc
agtcagtcaagcgatggagacaagaggaagagaaataaaaaaagagatgatgactatggg
ccaaaaggtgttggggcccagcctgtgggtacaggtgcgggagcagagcagcatggggtg
cgtggagggaccgggtctgattcaggagatgctggctcgtcaggtgtgccgagagctgag
agggccaaagacaaagtgcttcaaagaatgcagcagttcaagagagccagtccacagagg
atggtgcacaaggacaagagccagacaacaagccatgagatcccctccacttctcctcct
ccaccgctggagcaaagacaagatactccacagtccctcagctcaggccttcacctggag
ccccaggacagtgacgaggctatggccttgcggctgcagcaggagctgaacagggagacg
acaggcgtccagacggtggacctggaggacggaggcctcttcttttgtcagatctgccag
agagacctgtcacatatgacccctgaggggcgaacgcagcatctcaacaggtgtctggat
gagagtgaagggagcgctcctcctcttcttcctcctccttcttcttctggtgtccctgac
tgtcccatctgtggcaagaaattcaagtcccagaagagtcgctcgacccacctgaaacga
tgctcctcggacatgggcgtccctccggctgtgctgctgcaggctctgcagagacaggct
gaggacacccagaatgtcccctcagctaacacactcacagagactggaggcaccaaaaga
aaaggcccacccgggcctggcctcctagcaagaaagaaacccagaaagaagacagaaccc
ctggacgaagacaccatggttgccctggctctgtcctcctccctgctggaacgggagagg
gagtcagagagagcgttacagaccgagaccgcagcctctcacatctccatggctccagtg
ttgaagtggaggccagacagaggtcaggggcgcgggaggaggaaaaagggcgccgtccct
cgccctccgccgctcctccttgtccaggatgccgcggcggctctggtgaggctgcaggag
cgcgtttctgctctcctcctgcgcagccgggcgccctctccccccagcccgaccctcagc
cccagcactcttccaggccggtgcggtgctgcccccctctggcagaagagcactctgctg
gacggaggctccacctgtgtgtctgatttctacacgccggagctcagagggttcatcacg
ccgtgggaccctgcagcgactgaatcagcctcctccagcaccttcagcaagtctgcagtc
caacctgtgagtgaaggaactcctgtcacagaaaccagggcctccatcctgccatcctcc
tcccagaccgctgcctcctccccggctccctccaccccagggacagggcagctctcagtc
gggagccagacactccgagacctgatggagctggccgaagatggcatgaccctcacgcag
cgtggttacactgcttcaaaccctgacggagagaaaagcaccactatgaccacaaacctt
cacctgagcggcttcatcccggaggcatccgaagagcgggctgacctctgcgcgagcggc
ttcctaccagaaatgacccgcacacgcttggatgagacccaccgccgaacgaggggggcg
accgatcaaccgcaaccagataaagaccgaggcggccaccgatcagtggcgctgtccagg
ctggcatcagacctgagcagcatggtgaacaaccctcagttcagtgatgtgcagctccag
gtggacagtggggaggtctactttgctcattccttcatggtgtacgctcgctgccccctg
ctggcagaaatggtacatgaaagtggtattggggtgcaggaggagggaatgccagcagct
cagagggtgttgataagcgacgtcccagaacaggcagtgttttctttgctgcagtatctc
tacacagccaagtgctccatcccggcgtcactgcggcctcatgtactggagcttgcatct
aggtttgacctgcaggagctgcagcagctttgcaaggtctgccaagaggatgcagcgact
cagggagaggaggatgactacatgaaccaggaggagaacgtcagcaaccacacagaccag
gccttcgtggagctgctccgctccatgtggaatgaagaggatgaagacaacaggggtacg
gacacagacgaaggaagcggtgaagaaagaggatcggaagaagatcgccaagccgatgac
ctcgcggcaggtgacagagagattggcgaggagaaggtgaacgaggaagagctggaggag
atatacgagtttgccgccacacagagaaagaaggaggaggaagaagacagcatgaaagag
gaagaggaggaggtgaaggtagatgaggaggaagatggggaagaggtgttcgcacaactg
gcggaatctgaaccgatctcagcagagccgaatcctctccctcagccggaccggagcttg
gaccgcagctacaaccgcctcttctcagactcctggggggtctacgaggaaggagacccc
ccctcccgaccctccacctctggccagccaaggacacgcgcccttcagacacccctgtcc
tcacataaactctcatctgaactgtcaggcagaactttgcttcagtcttcagcaagcgta
gtcaatgacctttcccccagccctccgcccagtgcatccaacctgccgatcccaggtcag
tcccctggtcaagaaggagaccgggggacagatgctgctgaccaggtcgtgtctaaagaa
ggaaacactttgaggcgtgaaagcagaagtcctcatactctttctctgtccactgattcg
cctgagaaaaagagggaacctgaactcatagttttgtcagactcgagcgaggacatggag
gtcgttctcagttcccgcagcccctcaccacattctccttgcgccaaccagaacccacgg
agctacacccagatcaaatctccgccagtgaaacccaacaaacccagccaggagaatgaa
aagtccagcagtttggagtcgagtcctgaacgtgcaggcccagcggactgttctgcagaa
gtgtcctggctgatcccatccacgccgctccagcatagacacagcagcaccaccaccacc
agctccactcagaccagaagcagcatgtgcaggacgcaactgttccctaaagttgacact
tcctcaccctctgctttctcttctcctgcctgcggcggcccaacagagggcagtgttccc
tggataaaacaggaagagatgcttccctgcagctccagctttaatctcaacctttctccc
aaaagatcaagcagttctgacgtgagtaaagttaaagaggtgtttgcagttccctcgagc
caatctaagcgcctgagcttgacttcctcgaagcagtacacacccctccacccccagctc
caaccgtacagcagcactcccctgcacactgagctccaccagcctcctgttcctctcaca
acctctccgctcgctcggcagaggccgccaagccgaggacgggatagtttggcatctgat
ggcccggagaaaaccgagttggggagctttcatctctcccctctgtccgacccttcagat
ccaccctcttcctcctcgaacagacgtcttcagagttcagagagacacagcgactcttct
ccacaaagtcgacgatctaatgagttgaggagtagagacgagctatcgaggggaacaaga
gatgatgaaggagaaagggagttgcagtttgaaaataaagagacgtgcgaggaaggagag
ctggaagaagcaggagtggccgacattgctgaatccagtttccagcagagcttcatggcc
atggacgagccccccatcgctttcaacgactcgtggggcctggacgtctgcgccgaggcc
aacccgggctgcttcagtctgaggctggaggacagcgtgggatccagccagcacgagaac
agctcgggacgacgagaaccagccaggtcgtcttcctccactgatcaaagtgtccggtcc
tcgaagagtcatagcagcgcgaccgtcccctctccatccaaagcccacagtacacatcca
tccacaagtgtacaggctcatccaggccctccattcaccccctcacctcctgatcccacc
atccagacctcaccagggatcaacaacagcctcctagaccccaaaatatgggacagctgg
gaggaggaagaggagggggaggctcttcctctctctcagagggttaacacttgtgcccag
ctcaaaacgcctgcttcatcacgcaataaaaggcgtcgtacgttggtccccatcactccc
atgcctcactactctgacctggacacaccggagctcaagaacaaactcaacaggtttggt
gttcggcctttaccgaagcgccagatgatcctcaagctgaaggagatccaccagtacacc
caccagctggtcagctctgacgaggaggaggaggaggaggaggaggtggtatcctctgtg
ggccgcacagctcaggtgaagcctccacccagcagttcagtgtccgccggcaacaggccg
ctctcctgcactcagacagtgaggtttaaagaacccagagcgcctgctgatgcctcccct
ctgagacacaacatggaggaggaggagaatgagctgctgtctgcctcacagggctccaac
acatcatcaactgcagccagtgaagaatctgaaaggtccaacccagttttgtgcctctcc
tccgatgccaactcagacagcgacggcggcatatcctcctcccaggcggcgacgcgcctc
caggatcgcctccgggctgtgcgctccttcatcctgtccgactctgaactgtacactcag
atcctccagtaccagcctctggtcctgtctcagctccagggacgactcaaggcggccggg
atccgcttgggtaccaccaagctggtggactacttggactcccagtgcatcaccttcacc
acggccaaaccgggccagtccgcaccaggccgtaggagggtaaagaggacaggcaggggg
gctaaggcagcgggtgaaagcggagcgagcaggaacagaggcgttccagctgtattttga
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integrated database retrieval system
