Acanthopagrus latus (yellowfin seabream): 119007568
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Entry
119007568 CDS
T08233
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119007568 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119007568 (clp1)
Enzymes [BR:
alat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
119007568 (clp1)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119007568 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
MMR_HSR1
TniB
AAA_16
AAA_22
CbiA
Motif
Other DBs
NCBI-GeneID:
119007568
NCBI-ProteinID:
XP_036933226
LinkDB
All DBs
Position
18:21506375..21509761
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AA seq
457 aa
AA seq
DB search
MPLLPGIDFLLSVMAAEGEVKTTEDAPASGKVCTRFDLEKETELRFEVEAGETAEAAEQV
ELELLTGMAEVFGSELNRNKKYVFGPGSKIAVFTWQGCSVNLFGKPEVAYVSKDTPMLLY
LNTHAALEQMRKQAERDNERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVG
QSGVSVPGTVSALCIERPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSRLAEVFSQ
RCEVNRKASVGGCIINTCGWVKGSGYQALVHCASAFEVDVVLVLDHERLYNELKRDLPHF
VRVVLLPKSGGVVERSKDCRRDARDEKIREYFYGFRGVSFYPFSFEVRFSDVRIYKIGAP
SIPDSCLPLGMSQDDTQLKLVPVTPGRDLTYHVLSVSSAEDGEDGSRKSLVESPVCGFIV
VTNVDTQTQVMKVLSPAPRPLPRHTLLIMDIRFMDMK
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgccattattgccaggtatagactttctcttgtcagtcatggcagcagagggggaagtg
aagacgactgaagatgccccagcatccgggaaggtctgcaccaggtttgacctggagaaa
gagactgaacttcggtttgaggtggaggcaggggagacggcggaggcagcagagcaagtt
gagcttgagctcctcacaggaatggctgaggtgtttggttctgagctgaatcgcaacaag
aagtacgtatttggaccaggctccaagatcgcagtgttcacctggcaaggctgcagtgtg
aatctttttgggaaaccagaggtggcttatgtgtccaaggacactcccatgttgctctac
ctgaacacacacgctgccctggaacagatgagaaaacaagcagagcgagacaatgagagg
gggccgagggtgatggtggtgggacctacagatgttgggaagtcaacagtgtgccggctg
ctattgagctacgctgtgagggtgggccgccggccaacactggtcgaactggatgtcgga
cagagtggggtgtctgtacctgggacagtgtcagctctgtgcattgagcgtccagcagat
gtggaggagggtttctcagtccaggctcctttggtttaccactttgggtctactacccca
ggcaccaacatcaaactttacaacaagctgacgtcacgcctggctgaggtgttttcccag
cgctgtgaggtgaacaggaaggccagtgtgggaggttgcatcatcaacacctgcggctgg
gtgaaaggctctggataccaggctctggtccactgtgcctcagcctttgaggttgatgtg
gtgctggtgctggaccatgagaggctctacaatgaactcaaacgagacctccctcacttt
gtccgggtggtgctcctacccaagtcaggaggagtggtggagcgctccaaggattgccgt
cgggatgctcgggatgagaagatccgtgaatacttctacggcttccgtggagtgtccttc
tacccgttttcctttgaagtacgtttctcggacgtccgcatctacaagatcggggcgcca
tccattccggactcgtgtttgccactgggaatgtctcaggatgacacacagctaaagctg
gtacctgttacaccaggaagagaccttacgtaccatgtgctgagcgtgagcagtgcagag
gatggagaggacggttctcgaaagagtcttgtggagagccctgtctgtggcttcattgtg
gtgactaatgtggacacacagacacaggtgatgaaagtgttgtccccggcgcccagacca
ctgcccagacacacactgcttatcatggacatccgctttatggacatgaaatga
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