Acanthopagrus latus (yellowfin seabream): 119007672
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Entry
119007672 CDS
T08233
Name
(RefSeq) protocadherin beta-16-like isoform X1
KO
K16494
protocadherin beta
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
alat04515
]
119007672
Cell adhesion molecules [BR:
alat04515
]
Cadherins
Protocadherins
119007672
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
7TM_GPCR_Sri
Bact_surface_Ig-like
RibLong
Motif
Other DBs
NCBI-GeneID:
119007672
NCBI-ProteinID:
XP_036933423
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Position
18:20709421..20715487
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AA seq
825 aa
AA seq
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MMDCLRISARRGRWPALFFILCLLKLSSVCGQARYSVPEEQAEGSFVGNIGRDLGLDVAR
LVSGKARIITKGSRQYVDLNRDKGTLVIKERIDREELCGKTTPCSFNFEVILENPIQLYR
VTVEVIDINDNSPLFPKDEISLKIAENAAAGTRFSLESADDPDVGVNDIQKYTLKPSDHF
KLEVQSQPDGGTFIEMVLQNSLDREKEETHTLVLLASDGGEPHRSGTVRIHVTVLDANDN
APVCSQPVYKADVKENSAVGSVVTTVSANDADKGVNSEVTYSIGHVAKDAKQLFEVNINT
GEIKVAGKLDYEKSKTYQLNIQASDHGGFTDTCKVHIQIIDENDNIPTIQLMSFSNSISE
DSPPGTTIAVVNVDDEDSDGNGVVKCSINSDVPFKIESSLTGYYTIVTEDFLDRESVPEY
NITITVSDQGSPPLSSSKNINVKVSDVNDSPPKFDQSEYSKTVPENNSPGFPVFTVSARD
ADWGQNARVSYFLQEKQINGAAVSSLVSVNSENGVIHAVRSFDYEQIKWFEFNVTARDAG
SPPLSSVATVRIIVQDQNDNPPQVLYPVQTGGSLVAEMVPRSADVGYLVTKVVAVDVDSG
QNAWLSYKLQKATDRALFEVGLQNGEIRTIRQVTDKDAVKQRLTVIVEDNGQPSRSATVI
VNVAVADSFPEVLSEFTDFPHDKEYNDNLTFYLVLALAVVSFLFITCLVVIISVKIYRWR
QSRVLYHSSLPVIPYYPPRYSDTLGTGTLPHVYNYEVCRTTDSRRSDCKFGGAGSQNVLI
MDPSSTGTMQRIQSEKSILDEPDSPLEVGFVFFIKFYSFKTVCYF
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgatggattgtttgaggatttccgctcgtagaggccgatggccagcgctgtttttcatt
ctttgtcttctcaagctgagctcagtgtgcggacaggctcggtactccgtaccggaggag
caggcggagggatctttcgttggaaacattggtagagatttgggtttggatgtggcgagg
ctcgtttcaggtaaagctcgtattattaccaaaggaagccgacagtacgttgatttaaac
cgagacaaaggcactcttgttatcaaagagcggatcgaccgagaagagctgtgtgggaag
acgacgccctgtagcttcaacttcgaggtcattttggaaaatccgatccagctttatcgt
gtcacagttgaggtcatagacatcaacgataacagtccgttgttcccaaaggatgagatc
agtttgaaaatagctgaaaatgctgcagcgggtactcgtttctcactagagagtgcagac
gaccctgatgttggtgttaatgatattcagaaatacacacttaaaccatcagatcatttt
aaattggaagtacagagtcagcctgatggaggaacattcatcgaaatggttttacaaaac
tcgttagaccgagagaaagaggagactcacacactggtgctgctcgcttcagatggaggg
gagccacacagatcagggacggtgcgtattcatgtcactgtgctggatgctaacgataat
gcaccagtgtgtagccagcctgtttataaagctgatgtgaaggagaactctgctgtcgga
tccgtggtcaccactgtcagtgcaaatgatgcagataaaggagttaatagtgaagtaact
tattctatcggtcatgtagccaaagatgcaaagcagctgtttgaagtaaatattaacacg
ggagagatcaaagttgcaggtaaattggattatgaaaaatcaaaaacgtatcaattaaat
attcaggccagtgaccacggggggtttacagacacgtgcaaagttcatattcaaataatt
gatgagaatgacaacatccctacaattcagctcatgtcgttttctaactccatctccgag
gattctcctccaggtacaactatagctgttgttaacgtagatgatgaagactctgatggt
aacggtgtcgtcaagtgctccattaactctgacgtgcctttcaaaatcgagtcttcatta
acaggatattacactatagtaacagaagacttcttagacagagaaagtgttcctgagtat
aacatcaccatcaccgtctccgaccaaggctctcctcctctgtctagcagtaaaaacatc
aacgttaaagtgtctgacgtgaatgacagcccgccaaagtttgatcagtcagaatatagt
aagactgtcccagagaacaactctcctggatttccagtgtttactgtcagtgctcgtgat
gcagactggggccaaaacgctcgagtttcttactttctgcaggagaaacagattaatggg
gctgctgtgtcttcattagtgtcagtgaattctgaaaatggcgtcattcacgctgtgagg
tcgtttgattatgagcaaatcaagtggttcgagtttaacgtgactgctcgcgatgctgga
tcccctcctctgagctcagtggctacagtcagaattatagtccaggaccagaatgacaac
cctcctcaggttctgtacccggtccagactggaggctctctggtggctgaaatggtgcct
cgttcagcagatgtgggctatctggtgactaaagtggtggctgttgatgtggactctgga
cagaatgcctggctctcctataaactgcagaaagccacagacagggcgctgtttgaagtg
ggcttacagaatggagaaatccgaactatccgccaggtgactgataaagatgctgtgaaa
cagagactgactgttatagtggaggacaacgggcagccctctcgttcagctacagtcatt
gttaacgtggcggtggcggacagcttcccggaagtgctgtcggagttcactgactttcct
cacgacaaggagtacaatgacaacctgactttttacttagtgctggctttggctgtagtg
tccttcctgttcatcacgtgtttagtggttattatatcagtgaaaatctacagatggaga
cagtctcgcgtcctgtatcactccagtctccctgtgattccatattatcctccacgttac
tcagacactttggggacagggactctcccacatgtgtacaactacgaggtgtgcaggacg
actgactccagaaggagtgactgtaagttcggcggagctggtagtcagaacgtgttgata
atggaccccagttctacagggacgatgcagcggatacagagtgagaagagcatcctggat
gaaccagactctcctctagaggttggctttgtcttttttataaagttctattcctttaaa
actgtatgttatttttga
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