Acanthopagrus latus (yellowfin seabream): 119008404
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Entry
119008404 CDS
T08233
Symbol
trim55b
Name
(RefSeq) tripartite motif-containing protein 55b isoform X1
KO
K10654
tripartite motif-containing protein 55
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119008404 (trim55b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
alat04121
]
119008404 (trim55b)
Ubiquitin system [BR:
alat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
119008404 (trim55b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_2
zf-RING_5
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
Sina_RING
MTCP1
zf-Nse
Prok-RING_4
Zn_ribbon_FGT1_2
zf-RING_10
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
119008404
NCBI-ProteinID:
XP_036934554
LinkDB
All DBs
Position
19:complement(14158334..14168309)
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AA seq
389 aa
AA seq
DB search
MLLCNVGHFKTFVKNMSMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQASN
PYLPTRAGSLTSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDMFKQESSSSKPAPE
RKEEMPMCDVHEDEKINIYCVTHGVPTCSMCKVFGAHKDCEVAPISSIYQTKKTELSDGI
AMMVGNNDRMQGIISQLEEACRAIEENGRRQKTVVCEKFDQLYTILEEKKRQMSQKVTAE
QEEKVNYIRGLTKKYGDHLEESCKIVEQGIQTMEEPEMALFLQNTKPLLKKIADASSTAH
LDKVERSYENMDHYNVEFKKEGRALRSIDFIQDEEDEEEDDVDGEAGAEEGEGAQTVSGG
NAVTAASVQPPAPQQTNSPPSAAKSAAST
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgttactgtgtaacgttgggcatttcaagacgtttgttaaaaacatgagtatggacaac
ttggagaagcagctgatctgtcctatatgtctggagatgtttacaaagcccgtggtcatc
ctgccgtgccaacacaacctctgcagaaaatgtgccaatgatatttttcaggcctctaat
ccgtacctaccgacaagagctggctcactgacgtccggtggccgcttccgatgcccgtcc
tgcagacatgaggtggttcttgacaggcacggtgtttatgggctgcagaggaaccttctg
gttgagaatatcattgacatgttcaaacaggagtccagcagcagcaagccggcgccagag
agaaaggaagagatgcccatgtgtgacgttcacgaggacgagaagatcaacatttactgt
gtcacccacggcgtgcccacgtgctccatgtgcaaggtgttcggggcacacaaagactgc
gaggtggcgcccatctccagcatctaccagacaaagaagacggagctgagtgacggaatc
gccatgatggtcgggaacaacgacaggatgcaaggcatcattagtcagctagaagaagcc
tgtcgtgccatagaggaaaatggccggaggcaaaaaactgtggtgtgcgagaagttcgac
cagttgtacaccatcctggaggagaagaagaggcagatgagtcagaaggtgacggccgaa
caggaagagaaagtgaactacatccggggccttaccaagaagtacggggaccatctggag
gagagctgtaagattgttgagcaggggatccagactatggaggagccagaaatggctttg
tttctacagaacacaaagcctctcctcaagaagattgcagacgcatccagcacagcacac
ttggacaaagttgagcgcagctatgagaatatggatcattacaacgtagagttcaagaaa
gaggggagagccctgcgcagcattgacttcatccaagatgaagaggatgaagaagaagat
gatgtggatggagaagcaggcgctgaggaaggagagggggcccagactgtttcaggaggc
aatgctgtcacagcagcctccgtccaacctcctgcaccccagcagacaaactcccccccg
agtgcagccaagagcgctgcttcaacctag
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