Acanthopagrus latus (yellowfin seabream): 119008714
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Entry
119008714 CDS
T08233
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
119008714 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
alat04131
]
119008714 (scarf1)
Membrane trafficking [BR:
alat04131
]
Endocytosis
Phagocytosis
Scavenger receptors
119008714 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
119008714
NCBI-ProteinID:
XP_036935234
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All DBs
Position
2:15925154..15932541
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AA seq
999 aa
AA seq
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MSWKTKEVALTSPGYGKRKPGGFDLSGCAGATRRLTGEKEGGKGGGQTEREILPLIVLPR
REERKNSGRKDVRQKDIRPGFWFSDCVEMNLLLGALSALLCCSLSSSQTLDPAGKNVCHN
IRDPSTLVCCTGWRQEGRECTIPVCEGEQACHKDEICAYPGVCRCPPGFYGAHCKTRCPP
DFWAPDCHKVCQCHPNGRCNPVTGECTCNTNRWGPLCQYTCKCGRHGHCHPVHGNCTCDE
GWYTPSCSKPCQCASGTSVGIGCDQLTGRCQCHRGHWGLKCPGACNCYMSPCNQRTGVCE
CREGWWGPTCDRRCNCDLKHSSCNPVSGQCVCHLGYQGQFCNHPCEDGKYGTGCTMSCGF
CKDKQPCSATDGTCEACEPGWNGTQCDRLCPPGYYGDGCQMKCPRCRNNEPCDPGTGQCG
SCDPGWTGARCEKACSNRTFGDACRFPCSPCFHGNCHHVTGRCVCQPGFQGESCNSSCPA
LQFGLNCSSVCDCGEGVQCNSVTGVCPSSVRGSVLAGVLVPLFLLLLAVLFCCLCCGGGP
VDGKDRATVADGGWSVRMKYHVYSVLANIGAALPCISNWSSGLPRVTVSHHDPELTFNHS
FIEPPSSGWVTEGSSFDSDEEEGEALYCVPPREDIPAVAGGEFQEMSSKCNMFLDPSGFS
SEDITSPFNIPRTSSIAKSKRPSVSFAEGTRFSPKERRGSAQDPAGLPGHPRSKPKSPWG
VLMLSALQSQGGVARAGEEDGAEVEESEDEVNVQATDNRESNCEVSDQEADRTPSRSTLQ
VPGASGRRRTMSNTAAHKGLQLPTSASDAQGGSSDKVTTVYVTVGKAGRPVSKTETSSEG
PVQAMLRRLGSLQRQREQESNRPKPKTAEGIIKPPRKKLGVRASVWEQGGPPGGEVGICK
PIRRKHASLNSSDTAGASDTPPSEGGTPKRPLSSILKSVPELASADSGSDLRAEGDTGAG
RIESNYLTVGPAGDAASLTEVIANEGAEPCYENVMIKQS
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgtcctggaagactaaggaagtggctctgacttccccaggatatgggaagaggaaacct
gggggcttcgacctctctggctgcgccggagccacaagacgactcacgggagagaaagaa
ggagggaagggtggggggcagactgaaagagagatactgcctctcattgtactccctcga
agggaagaaagaaagaattctggacgtaaagacgtgagacagaaagacattaggcccggt
ttttggttttcggactgtgtggagatgaatcttctcctcggagctctgagtgctcttctc
tgctgctcgttgtcctcctcacagactctggatcctgctgggaagaacgtctgccacaat
atcagggacccgtccaccctggtctgttgcactggatggcgtcaagagggaagagagtgc
actatacctgtgtgtgagggtgagcaggcctgccacaaggatgagatctgtgcgtatcct
ggagtgtgtcgctgcccacctggcttctacggagctcactgtaaaacacgctgtcctcct
gatttctgggcaccagactgtcacaaggtgtgtcagtgccacccaaacggtcgctgtaac
cccgtcacgggggagtgcacctgcaacaccaaccgctggggtccgctgtgccagtatacc
tgcaagtgtggccggcacggtcactgccaccccgttcacggaaactgtacctgcgacgag
ggctggtacacgccaagctgctccaagccatgccagtgtgccagtggaacatctgtgggg
attggctgcgaccagctgactggtcggtgtcagtgccacaggggccactgggggctgaaa
tgtcctggcgcttgcaactgctacatgtcgccatgtaatcagcgaaccggcgtgtgtgaa
tgccgagaaggctggtggggacccacctgtgaccgacggtgtaactgtgatctcaaacac
agtagctgtaacccagtcagcgggcagtgtgtgtgccacctgggataccagggtcagttc
tgcaatcacccctgtgaagacgggaagtatggtactggttgtacaatgagctgtggtttc
tgtaaagacaagcagccctgctctgccactgatggcacctgtgaggcctgtgagcccggc
tggaacgggacacagtgcgaccgcctgtgtccacctggttattatggagacggctgccag
atgaagtgtccacgctgcagaaacaatgaaccatgtgacccaggaactgggcaatgtggg
agttgtgaccctggatggactggagccaggtgtgagaaggcctgctccaacaggacgttt
ggagacgcctgccgcttcccgtgcagcccttgtttccacggcaactgccatcacgtgaca
ggaagatgtgtctgtcagccaggcttccagggagagagctgtaacagcagctgccctgcc
ctgcagttcggcctcaactgctcctctgtctgtgactgtggtgagggcgtccagtgcaac
tcggtcactggtgtctgtcccagcagtgtgcgaggctctgttctagcaggtgtgctggtt
cctttgttcctgttgctacttgctgtgctcttctgctgtttgtgctgtggaggaggccct
gttgatggcaaagacagagcgactgtggctgatggaggctggtcagttcggatgaaatat
cacgtctacagtgttctggctaacatcggtgctgcacttccctgcatctctaactggtcc
tctggcctgcctcgtgtcactgtatctcaccatgacccggaactgacattcaaccacagc
ttcattgagcctccctcttctggctgggtgactgaagggtcgtcttttgacagtgacgag
gaggagggagaggcgctctattgtgtccctccaagagaggatattccagcggtggcgggt
ggcgagttccaggagatgagctccaagtgtaacatgttcttggacccgtccggcttcagc
agcgaggacatcacctcgcccttcaacatccctcgtacctccagcatcgctaaatccaag
cggccttctgtgtcttttgccgaggggacccgcttcagccccaaggagaggcgtggctcg
gctcaggaccctgccggtctccctggacatccacgcagcaaacccaagtcaccctggggg
gttttgatgctgtctgccctccagagtcagggaggtgtagctagagctggggaggaggac
ggagctgaggttgaggagagtgaagatgaggtcaatgtgcaggcaacagacaatcgggaa
tcaaactgtgaggtcagtgaccaggaagcagacagaactccatctaggtccaccctgcag
gtccccggggcttcaggacgaagacggactatgtccaacacggctgctcataaggggctt
cagctgccaacatctgcctctgatgctcaaggcgggagctcagataaagtcaccacagtg
tacgtgacggtgggtaaagcaggtcggcccgtgtcgaagacggagacgagctctgaaggc
cccgttcaggccatgctgagacggctcggcagcctccagagacaaagggagcaggagtcg
aacaggcccaagcctaaaacagctgaagggattatcaaaccaccgaggaagaagctcgga
gttcgggccagtgtgtgggagcagggagggccgcctggaggggaagtaggaatttgcaag
ccaatcagaagaaagcatgcttctctaaactcctctgacacagccggtgctagtgacacc
ccaccatcagagggcggcactcctaaaaggccgctgtcgtccatactgaagagcgtgcca
gagttggcttcagctgactcggggtcagatctgagggcggagggagacacaggtgcagga
aggatcgagagcaactacctgaccgtgggaccagcaggagacgctgcgagtctcaccgag
gtcattgccaatgagggtgctgagccctgctatgaaaacgtcatgattaaacagtcataa
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