Acanthopagrus latus (yellowfin seabream): 119008960
Help
Entry
119008960 CDS
T08233
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119008960 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alat03032
]
119008960 (topbp1)
03400 DNA repair and recombination proteins [BR:
alat03400
]
119008960 (topbp1)
DNA replication proteins [BR:
alat03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
119008960 (topbp1)
DNA repair and recombination proteins [BR:
alat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
119008960 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Acetyltransf_2
Motif
Other DBs
NCBI-GeneID:
119008960
NCBI-ProteinID:
XP_036935642
LinkDB
All DBs
Position
19:15259851..15271499
Genome browser
AA seq
1514 aa
AA seq
DB search
MSKGEGAGFIVKFVESKGQRTEHAVKAYEAVLELQSEKYLKTIDEDAVLQMDQKDKSLFV
FSSFTTPAFLHCKKLGCRVVSPLVVLYCLKQQHCVPKAERPVYNMAMADITISCTSLDKA
ARTEVMDLVQLMGGRVYLDLNVSVTHLIAGEVGSKKYLVAASLGKPILLPSWVKACWEKS
QDCLFRHTDLPIEDYLCPVLRGCTVCVTGLSSTERKEVQRLCEQHGANYTGQLKMNECTH
LIVSEPTGQKYECARKWNVYCVSLHWLFDSIEKGFCQDESRYIVERNASKTTRPHTSTPT
GTNKKEEGPSLLGLSHISVNASMTINDTAVTNSTISRLEAPDPIDSLDLTVCPADDILDG
CKLYLCGLPGKKLEKLRRLVNAAGGLRFNQPSEELTHVVMGELDQDIKNFLSKATHRPHV
VTVQWLLDSFNKGSQLPEAAYFHPDCLPPDAAAVPVPAHRTPTSRASAGPPVASPITPRH
KRAEEDLLSQYMDDDPTIVDMPPPAESNSRRSISTAAEPQPDPWLPNQTRGPEPESTQQE
ASEAGLFFGKCFLLVGFGAEAESQLSLLVTENGGRVLMGRTRVVADYAVVPLLGCSVEST
VDEVVTDTWLAMCVEKECVLQLSSNPLFTPVPVMEGHFPLKNCVLSVSQFTGAERESLVE
LAKHLGANVQDYFVRLANQKKGMLASTHLVLQSPEGTKYQAAKKWGLPAITMKWILESAR
TGQKAEEERFLVDLPPSPERDDESFVSGSQKPSMPPPACPSPRIPLLGPQGGKAVTPLDL
GRFRSKVFHSVLDKMKPEEDVCTPKQNQEGSRRNPLQKEPSLQLDTPSRFLSRDQLFRPS
FNVKDALGELETPGGKSIPGERVGTPLTDVIHRNLKVALANSSRNNNSDMQAISASPQLS
KTTETEVSEKEVGPLAGVIICVGKKLSKMQSELNAIAASLGADFRWACDDTVTHYIYQGR
VGDNTKEYRGVKERGLHVVSQYWLQACAEEQRHVPESLYPFTYNPKMSLNLSQVPNCSQR
SPTSRRTQHKDISESEHVATEEATILRRVSDGSANQEEVRDAADRSDISETLEMRENLHR
QLQEIMSATKITTGRRASVRLSRMGSGGADSGPNTPDGSRVGRTGNRRTLEALRVSREAA
MDINTEPSQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSDSLAGPPPPTAENGPQFRD
SMTDSELVEMAACDVIDQHMRQKVKTPPTKQRENDLLTPEAPSIAFPLANPLVAPEPQEE
HEEAKQPPRFQLSSLSPQERIDYSHLIEELGGVVLDKQSFDPSCSHIIVGTPLRNEKYLA
AMAAGKWILHRSYLEACRSVGCFIQEDEYEWGSSSILDALPSITSQQRRLALAAMRWRKT
LQGRSEQGGAFSGWTVMLNIDQSRESGFRRLLQSGGAKVLPSPSPSLYKDATHLFADFTR
LKPGDFRVDVSVASNQGVTCLKPEYIADYLMQEPTPPIELYYLTDAASEEPAGTPSRKRK
AAVDNSRLKKTRLN
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaggagaaggagcgggcttcattgtgaagtttgtggaaagtaaaggacaaaga
acagagcatgcagtcaaagcttatgaggccgttttggagctgcagtctgaaaagtacttg
aaaaccatcgacgaagatgctgtcttacagatggaccagaaggacaagtctctgtttgtc
ttcagcagcttcaccaccccagcttttctgcactgcaaaaagcttggttgcagagtggtg
agtccactggtggtgttgtactgcctgaagcagcagcattgtgtccccaaagcagagagg
cctgtctataacatggccatggctgatatcaccatttcctgcaccagcctggataaagca
gcacggacagaggtgatggatctggtgcaactcatgggtggacgcgtctatcttgaccta
aatgtatctgtcacacacctgatagcaggagaggtgggcagcaagaaatacctggtagct
gccagcttgggtaaacccatcctgttgccctcatgggtcaaagcctgctgggagaagtct
caggactgtcttttcaggcacacagatctacccattgaggactatttgtgtcctgtgctg
cgtggctgcactgtttgtgtgacgggactctctagcacagagcgtaaagaggtgcagcgg
ctctgtgagcagcatggagcaaactacactggtcagctcaaaatgaatgagtgcacgcac
ctcatcgttagtgagccaacaggtcagaaatacgagtgtgcacggaagtggaatgtgtat
tgcgtgtcactgcactggctgtttgacagcatagagaagggtttttgtcaagacgagagc
aggtacattgtggagcgcaacgcatcaaagaccactcggccgcacacttccaccccaact
ggcaccaacaagaaggaggagggtccatctctgttgggtttgagccacatttctgtcaat
gccagtatgacaataaatgacacagccgtcaccaacagcaccatcagccgcctggaagct
ccagaccccatagatagtctcgacctcactgtctgcccagctgatgatatactggatggc
tgtaagctgtatctgtgcggcctgccagggaagaaactggaaaagctgcggcgtcttgtg
aacgctgcaggaggtctgcgtttcaaccagcctagtgaggaactcacacatgtggtcatg
ggtgagctggaccaggacatcaagaactttctctccaaagcaacacacagaccccatgta
gtgacagtgcagtggctgttggatagtttcaacaaaggcagtcaactcccagaagcagct
tacttccaccctgactgtctgcctccggatgcagctgctgtgcctgtgcccgcccatcgt
actcccacctccagggcatcagctggtccccctgtggccagccccatcactcccaggcat
aagagagcagaggaagatcttctctcacagtatatggatgatgaccctacaatagttgac
atgcccccaccagcagaaagtaacagcaggaggtctatcagtacagctgcagagcctcag
cctgatccctggctaccaaaccagaccagaggaccggagccagaatcaacccagcaggag
gccagcgaggcaggcctgtttttcgggaaatgtttccttcttgttggctttggtgctgaa
gccgagtcccagctctctcttctggtgactgaaaacggaggcagggtgctgatgggccgg
acacgtgtcgtggcagactacgcggtggtcccactgttaggctgttcagtggagtccaca
gtggatgaggtggtcactgatacctggctggccatgtgtgtggagaaggagtgtgttctc
cagctgtcctccaaccctctgttcacccctgttcctgtgatggaaggacattttcctttg
aaaaactgtgtcctctctgtcagccagttcaccggagcagagagggagtctttggtggag
ctagccaagcaccttggagccaatgtccaggattactttgtgcgcctggccaaccagaag
aaaggcatgctggccagcactcatctggtgctgcagagccctgaaggcacaaagtatcag
gcagcaaagaaatgggggctcccagccattaccatgaaatggatactggagtctgctcgg
actggccagaaggcagaagaggagcgttttctggtagacctgccgccatcaccagagagg
gatgatgagagttttgtcagtggttcccaaaagccctccatgcctccaccagcatgtccg
tctccacggatccctttgctgggtccacagggtggtaaggctgttaccccgttggattta
ggtcgcttccggagcaaagtgtttcattctgtgttggacaagatgaagcctgaagaggac
gtctgcacccccaaacaaaaccaggagggcagcagaaggaacccccttcagaaggagccc
tcgttgcagctggatactccctctcgcttcctcagcagagaccagcttttcaggccatcc
ttcaatgttaaggatgcgctgggagagttggagactccagggggaaaatccataccagga
gagagggtggggacgccactgactgatgtcatccacaggaacctgaaggtggctctggcc
aacagcagccgaaataacaactcagatatgcaagccatctctgcgagcccccagttatcc
aaaacaactgagacggaggtctcagaaaaagaagttggccctctggctggtgttattata
tgtgttggaaagaagctgagcaaaatgcaaagtgaactcaacgccatcgctgcctcactc
ggagctgacttcagatgggcttgtgacgatacagtgacacactacatctaccagggccgt
gtgggagacaacaccaaggaatacagaggagtgaaggagcgagggctgcatgtggtctcc
cagtactggcttcaggcttgtgctgaagagcagaggcacgtccctgagtctctttatcct
ttcacctacaaccccaagatgagcctaaacctcagccaggtgcccaactgctctcagagg
tctccaacttcaaggcgaacccaacacaaagacatctcagagtctgaacacgttgccaca
gaagaagctacaattttacgtcgtgtaagcgatggaagtgcaaatcaggaagaggtgcgt
gatgctgcagatagaagtgatatttcagagactctagaaatgagagagaacctgcacaga
cagcttcaggagatcatgtcagccaccaaaataacgacaggcaggcgggcctcagtcaga
ctcagcaggatgggatcaggaggggctgactctggccccaacacacctgatggcagccgg
gttgggcgcactgggaacagacgtactctggaagctctgcgggtttcaagagaagcagct
atggacatcaacacagagccatctcagagtgagcagatagtttgggatgaccctacagcg
agggaggagagggccaagctagctgataacctacagtggcctggaagtccctcacaacac
tcggattccctcgcaggtccacctcctccaactgcagaaaacggccctcagttcagggac
tccatgacagactctgaactggtggagatggctgcttgtgatgtcatcgaccagcacatg
cgccagaaagtcaaaacgccaccaacaaagcagcgagaaaatgacctcctcactcctgaa
gcccccagcatcgcctttcctctcgcaaaccccctggtagcaccagagcctcaggaggag
cacgaggaagcaaagcagccacccagatttcagctgtcctccctcagcccgcaggaacgc
attgattacagtcacctcatagaggagctcggtggtgtagtcctggacaagcagtcgttc
gaccccagctgctcccacatcatcgtcgggactcctctgcgtaatgagaagtacctggca
gcgatggcagctggcaaatggatcctgcaccgctcgtacctggaggcctgccgctccgtg
ggttgcttcatccaggaggatgagtatgagtggggcagtagctccattctggatgcgttg
ccttccatcacctcccagcagaggagactggccttagctgccatgcgctggaggaaaacc
ctgcagggaagatctgagcaggggggagccttcagtggatggacagtgatgctgaacatc
gaccagagcagagaatcaggcttcaggcggttactgcagtcgggcggggcgaaggtcctg
ccgagtccctccccgtctttgtataaggatgccactcacctgttcgcagacttcactcgg
ctgaagccaggagacttcagagtcgatgtatcggtggctagcaaccagggagtcacatgc
ttgaaaccagaatacatcgcagactacctcatgcaggagccaaccccgcccatcgagctg
tactacctgaccgacgctgcctctgaagagcctgcgggcacaccgtcacgtaagcgcaaa
gcagcagttgacaactcaaggctgaaaaagacgcgcctgaactaa
DBGET
integrated database retrieval system
