Acanthopagrus latus (yellowfin seabream): 119009246
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Entry
119009246 CDS
T08233
Name
(RefSeq) thrombospondin-2-like
KO
K04659
thrombospondin 2/3/4/5
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04145
Phagosome
alat04510
Focal adhesion
alat04512
ECM-receptor interaction
alat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119009246
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
119009246
09144 Cellular community - eukaryotes
04510 Focal adhesion
119009246
09142 Cell motility
04820 Cytoskeleton in muscle cells
119009246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
alat04131
]
119009246
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alat04147
]
119009246
00536 Glycosaminoglycan binding proteins [BR:
alat00536
]
119009246
Membrane trafficking [BR:
alat04131
]
Endocytosis
Phagocytosis
Opsonins
119009246
Exosome [BR:
alat04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119009246
Exosomal proteins of colorectal cancer cells
119009246
Exosomal proteins of bladder cancer cells
119009246
Glycosaminoglycan binding proteins [BR:
alat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119009246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_CFP_C
TSP1_ADAMTS
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
119009246
NCBI-ProteinID:
XP_036936187
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All DBs
Position
20:complement(16995651..17009989)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSPLRGFPWLLILLSAAAVCAGVGGAKVDNASSEVCRHPCEELLGLLTEIHGLRIVTSNL
LEDLEKVSRENEEMRISLFELSTSNSGSSGSSSGGGRGNGRGNGRSRSHGRGGGGGGGGG
RDGNVDGHGYSDGDGRGYGDVDGRGYGDVDGHGYGDGHGRGYGGGDGRGYGGGDGRGYGG
GDGHGYGDGDGRGYGDVDGRGYGGGHGRGYGDGNGRGYGDVDGRGYGGGHGRGYGGGDGR
GYGDVDGRGYGGGDGYGDGDGRGYGDGYGRGYGDGDGYGDDDGDGDGYGDGDGDGYGYGD
HDELDRDRDGEVWCMQDGRIYEQGDDWDVDSCTSCTCQDGKVVCQQVSCPPVSCINPSFI
DGQCCPVCLNNGDGWSPWSEWTACSVTCGRGGHQRGRSCNGITPKDCTGPSVQTRSCMET
KCDRKARPNGNWGLWSPWSACTTTCGEGNITRVRLCNNPPPPKGGRGCAGSDRETQPCNN
TLCPIAGGWTSWTEWSVCSETCGGGLTSRERQCVNPAPQHGGKPCAGVAVDYEACNKQPC
PLDVCLLSSPCFPGVECTSHSDGSWECGRCPLGLSGNGTHCEDENECEVEDVCVTGCVNT
DPGYYCMPCPPRYKGTQPYGLGLQAAHENKQVCEPYNPCKDNTHTCHKYADCLYLGLASE
VLFKCMCAVGFAGDGFLCGEDSDLDGWPNKRLPCKQNATYHCQKDNCPTLPNSGQEDLDK
DGQGDACDPDDDNDDIMDERDNCPLVYNPRQFDSDRDGVGDRCDNCPFDSNPLQTDTDDN
GEGDACSIDIDGDEILNERDNCPLIYNTDQRDTDLDGVGDQCDNCPLLHNPRQLDSDSDL
VGDMCDNNEDIDEDGHQNSLDNCPYIANSNQADHDKDGKGDVCDHDDDNDGIPDDRDNCR
LVPNRDQLDSDGDGSGDACFDDFDNDSIPDALDPCPMNQDIGSTDFRKFQVVLLDPKGTT
QSDPLWVIRSQGTELLQTANSDPGIALGYDKFSSVDFSVTFYVNTNRDDDFAGIVFAYQS
SRRFYVVMWKQVSQAYWEKKPSKAFGTAGVSIKLVNSSTGPGEYLRNALWHTGNTRHQVR
TLWHDPNKIGWKDFTAYRMHLIHRPKTGFIRVVVYEGRDILSDSGAVYDHTLAGGRLGLF
VFSQEHVIFSDLRYECRDN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgagtccgctgagaggtttcccctggcttttgattctcctctccgcagcagctgtgtgt
gcaggtgtgggtggtgcaaaggtggacaacgcgtcgtccgaggtctgtcgtcatccatgt
gaggagctgctggggctgctcactgagatccacggcctgcggatcgtcaccagcaacctg
ctggaagacctggagaaagtctcaagagaaaatgaggagatgcggatatctttgttcgag
ctgagcaccagcaacagcggcagcagtggcagcagcagtggcggtggccgtggaaatggt
cgtggcaatggccgcagtcgaagccatggccgcggtggtggtggtggcggtggtggtggt
agagatggcaatgttgatggccatggctacagtgatggtgatggtcgtggctacggtgat
gttgatggccgtggctacggtgacgttgatggccatggctacggtgatggccatggccgt
ggctacggtggtggcgatggccgtggctacggtggtggcgatggccgtggctacggtggt
ggcgatggccatggctacggtgatggcgatggccgtggctatggtgacgttgatggccgt
ggctacggtggtggccatggccgtggctacggtgatggcaatggccgtggctatggtgac
gttgatggccgtggctacggtggtggccatggccgtggctacggtggtggcgatggccgt
ggctatggtgacgttgatggccgtggctacggtggtggtgatggctatggtgatggcgat
ggccgtggctatggtgatggttatggccgtggctacggtgatggcgatggctacggtgat
gatgatggtgatggtgatggctatggcgatggcgatggcgacggttatggctatggtgat
catgacgagctcgacagagacagagacggggaggtctggtgtatgcaagacggacgaata
tacgagcagggggacgactgggatgtcgacagctgcacctcctgcacttgccaggacggg
aaggtggtgtgtcagcaggtgtcttgccctccggtctcctgcatcaatccctcctttatt
gatggacagtgttgccccgtctgtctcaataacggagacggctggtctccgtggtccgag
tggacggcgtgctcggtcacctgtggccgcggagggcatcagaggggccgatcctgcaac
ggcatcacgcctaaagactgcaccggcccgtcggtccagacccgcagctgcatggagacg
aagtgtgaccgcaaggcgcgtcctaatgggaactggggcctttggtccccgtggtctgcg
tgcacgaccacgtgtggcgagggaaacatcacgcgggtccgtctctgcaacaacccccca
ccgccaaaaggaggtcgcgggtgcgccggcagcgacagggagacacaaccttgcaacaac
acactctgccccattgccggaggctggacgagctggaccgaatggtcggtgtgctcagaa
acgtgcgggggaggtcttacaagtcgggagcggcagtgtgtgaaccccgcccctcagcac
ggtgggaagccttgtgctggagttgctgtggactatgaagcatgcaacaaacaaccatgt
cctttggatgtatgtttgctgtcgagtccgtgtttccccggggtggagtgcacatcacac
agtgatggatcttgggaatgcgggcgatgtccgttgggcctgagcggcaacggcactcac
tgcgaggatgagaatgagtgtgaagtggaggatgtgtgtgtcacagggtgtgtaaacaca
gacccggggtactactgcatgccctgtcctccccgctataaaggcacccagccgtacggc
ctcggactgcaggcagcccacgaaaacaagcaggtgtgcgaaccgtacaatccctgcaaa
gataacacacacacctgccacaagtacgctgactgtttgtacctgggcctggcatctgag
gtgttgttcaagtgcatgtgcgccgtcgggttcgcgggcgatggcttcctgtgtggcgaa
gactctgatctggatggctggcccaacaagagattgccctgcaagcagaacgcaacgtat
cactgccagaaagataactgccccacgctaccgaactctggacaggaagacctggacaag
gacggacagggagacgcctgtgatcccgatgacgacaacgatgatatcatggacgagagg
gacaattgcccgctggtgtacaaccctcggcagtttgactctgacagagacggggtcggc
gaccgctgtgataactgtccctttgatagcaacccgcttcagacagacactgatgataac
ggagaaggagacgcctgcagcatcgacattgatggagacgagattctgaacgaacgtgac
aactgtcccttaatctacaacactgaccagagggacacagacctggatggggttggagac
cagtgtgacaactgtcccctcctacacaacccacggcagctcgactctgacagtgacctg
gtcggggacatgtgcgacaacaacgaggacatcgatgaggacggccaccaaaactctctt
gacaactgtccctacatcgccaacagcaaccaggcggaccacgacaaggacgggaaggga
gacgtctgcgaccatgacgacgacaacgacggcatccctgacgaccgggacaactgcagg
ctggtgccaaacagggaccagctggactctgacggtgacggtagcggggacgcatgcttt
gatgactttgacaacgacagtattccagatgcgctggatccctgtccgatgaaccaggat
atcgggtccacagacttcaggaagtttcaggttgtgttgttggacccgaaaggcaccacg
cagtccgaccctctgtgggtgatccgcagccaaggcaccgagctgctgcagacggccaac
tctgatcctggcatcgctttaggatacgacaagttcagctcggtcgacttcagcgtgacg
ttttacgtgaacaccaaccgagacgatgacttcgcaggcatcgtgttcgcctaccagtcc
agccgacgcttctacgtcgtcatgtggaaacaggtatctcaggcttactgggagaaaaag
ccgtccaaagctttcggcacagcgggcgtctcgatcaagctggtcaactccagcacaggg
ccgggagagtatctgcgcaacgccctgtggcacaccggaaacacccgacaccaggtcaga
acattgtggcacgaccccaataaaatcggctggaaggacttcaccgcctaccgcatgcac
ctcatccacagacccaagaccgggttcatcagggtggtggtgtacgaaggccgggatatt
ctctcggactcgggggcggtgtacgaccacaccctggctggcggcaggctgggactgttt
gtcttctctcaggagcacgtcatcttctcagacctcagatatgagtgcagggataactga
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integrated database retrieval system
