Acanthopagrus latus (yellowfin seabream): 119009610
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Entry
119009610 CDS
T08233
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119009610 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alat03400
]
119009610 (msh2)
DNA repair and recombination proteins [BR:
alat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119009610 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
119009610
NCBI-ProteinID:
XP_036936928
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Position
20:complement(17185957..17194402)
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AA seq
935 aa
AA seq
DB search
MAVQPKQNLSMDSAAEHGFLNFVFSMPEKPDTTFRVFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKHLGSGSRKLESVVLSKSNFEAFVKDLLLVRQYRVEVYKNHSKSSKEHDWRVEYKA
SPGNLTQFEDILFGTGTGAEGCAGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFPDN
EIFSNLESLLVQISPKECLLAQGEGNADGSKLREVVQRGGVLVSDRKRAEFSSKDMVQDL
NRLLRAKKGQTVASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLDLGQYMR
LDNAAVRALNLFQGSPEDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHTATLQDCYRVYQAVSHIPALISAL
ERYSGSYQVLLEAVFLSPLRDMQNDFVKYQEMIETTLDMNQIDHHEFLVKPSFDPVLSEL
REKMDELEKSMQAVLNSAARELGLDAGKTVKLESNAMLGFYLRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNSKLSSVNEEYSKNREEYEEAQNAIVKEIINIASGYVDPLQTLSDVIAQ
LDAVVSFAVASVSAPVPYVRPLLLADGCRRMELQQARHPCMETDADTAFIPNDITFVQGE
KSFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQVKG
VSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKIGSFCLFA
THFHELTALAAQQPTVHNLHVTALTSHNTLTMLYRVKPGVCDQSFGIHVAELAAFPPAVV
AMAKEKAEELEEFQEPAGEKSEQVEEPEAKRRRTDRQAGENLIQEFLEKVKSLPSDTMSE
EEVKTELRRMKKELIAKNNMYITEMLSRCVPSKTA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaacagaacctgtccatggacagtgcagccgagcacggcttccta
aacttcgttttctccatgccggagaaaccggacaccactttcagggtgttcgaccgtaac
gactactacacggttcacggaaaagacgccatattcgcggcgaaggaagttttcaagacg
aatggggtcatcaaacatctgggctcagggagtcgtaagctggagagtgtggtgctgagc
aagtccaactttgaggcctttgtgaaagacttgctgctggtgaggcagtacagagtggag
gtgtacaagaaccacagcaagagcagcaaggagcacgactggagggtcgagtacaaggcc
tctccaggaaacttgactcagtttgaagacatcctgtttggcaccggaaccggagccgag
ggctgtgcaggagtcgtggcggttcggttcgccacgggcgctgacggacagcgcgtggtc
ggggtcggctatgtggatgccgcccagaggacgatgggagtgtgcgagttcccggacaat
gagatcttctccaacctggagtctctgctcgtccagatcagccccaaagagtgtctccta
gctcagggggaaggcaacgccgacggcagtaaactccgggaggtggtccagcgcgggggc
gttctggtctctgacaggaagagagccgagttcagcagcaaggacatggtccaggatctc
aacaggctgctgagggccaagaaaggacagactgtggcgagcaacactctccctgagctt
gacaagcaggtggccatgtcgtgcctggccgcagtggtacgtttcctggagctgctctcc
gacgagtccaacttcaactccttcagtctgaccactctggacctgggtcagtacatgcgg
ctggacaacgctgctgtgagggctctgaacctcttccagggatcacctgaggacaccagc
ggagctcattcgttggctggtctgttgaacaagtgtcgtacgccgcagggtcagcggctt
gtcaaccagtggatcaaacagccgctcatggacaaaaccaaaatagaggagaggctggac
ctggtggagagcttcgtgtgcgactcggagctcaggcagacctgtcaggaggacttgctg
cggcggttccctgatctccaccgtctggccaagaagttccaccgtcacaccgcaacgctg
caggactgctaccgcgtctaccaggctgtcagccacatccctgccctcatctctgctctg
gagagatactcaggaagctaccaggtcctgctggaggccgtgttcctgtctcctctcaga
gacatgcagaacgactttgtgaagtaccaggagatgattgaaaccactctggacatgaac
cagatcgaccaccacgagttcctggtgaagccatcgttcgatccggtgctgagcgagctg
agggaaaagatggacgaactggaaaagagcatgcaggccgtgctgaacagtgcagccaga
gaacttggtctggatgccggtaagacggtgaagctggagtcgaatgccatgctgggtttt
tacctgcgagtcacctgcaaggaggagaagagtctgaggaacaacaagaaattcaccacg
ctggacgtgcagaagaacggagtacgcttcaccaacagcaagctgagctccgtcaacgag
gagtattccaagaacagggaggagtacgaggaggcgcagaatgccatcgtcaaagagatc
attaacattgcctcaggttacgtggatccactccagacgctgagcgatgtgatagcgcag
ctggatgcggtggtgagtttcgccgtggcgtccgtctcggctccggtgccgtacgttcga
ccccttctgttggccgacggctgcaggcgcatggagctgcagcaggccagacatccctgc
atggagacggacgcggacaccgccttcatccccaacgacatcaccttcgtccagggagag
aagagcttctacattatcacaggaccaaatatgggcggcaagtctacgtttatccgccag
gtgggtgtgatcgccctgatggctcagatcggctgcttcgtgccatgcgagaaggcggaa
ctcagcgtgatcgacagcgtcctggccagggtgggagcgggagacagccaggtcaaagga
gtctccacctttatgtcggagatgctggagacggctgccattctgcgctcggccacggag
aactcgctcatcatcatcgatgagctcggcagaggcacttccacgtacgacggcttcggc
ctggcctgggccatcagcgaacacatcgcctccaaaatcggctccttctgcctgtttgcc
actcacttccacgagctgacagcgctggcggcgcagcagcccaccgtccacaacctgcac
gtcacagcgctgacctcccacaacacactgaccatgctgtacagagtcaaaccaggagtg
tgcgaccagagttttgggatccacgtcgccgagctggctgccttcccgccagcggtggtt
gccatggcgaaggagaaggcggaggagctggaggagttccaggaacctgcaggggagaag
tcggagcaagtggaggagcccgaggccaagagacgacggactgacagacaagcgggggaa
aacctgatccaagaattcctggagaaggtgaagtcacttccttccgacaccatgagtgaa
gaggaggtgaagacggagctccggaggatgaagaaagagctgatcgccaagaataacatg
tacatcacagaaatgctttcacgctgcgttccctctaaaacagcttga
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