Acanthopagrus latus (yellowfin seabream): 119010069
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Entry
119010069 CDS
T08233
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119010069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alat03041
]
119010069
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119010069
Spliceosome [BR:
alat03041
]
Complex C
Other components
Step II factors
119010069
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
WHD_HA2
DEAD
AAA_22
Flavi_DEAD
AAA_19
ABC_tran
GIPC1_GH2
nSTAND3
T2SSE
AAA_16
AAA_30
Sigma54_activ_2
TsaE
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
119010069
NCBI-ProteinID:
XP_036937817
LinkDB
All DBs
Position
20:20228205..20237699
Genome browser
AA seq
1189 aa
AA seq
DB search
MAALDEIKRLEYLSLVSKVCTELENHLGICEKDLAEFIISLADKHPTFEEFKAVLCENGA
DFTDTLVGNLLRLINTMRSSPSTSKEVKAKNEQDRLKEKYPALCKPDAAAWTIPPRHPDK
DDEKVAAAAMRELEMLMPNICGTSSADRNVHSDRGRDTDRESGCKRSRSSSKDRDGDTNP
KHKRKRPSRWSDHPPSPRRDDGDNNNNNNKDDRDSDRWRDRLVDRPPPDEPVVGDIYSGK
ISSIMQFGCFVQLEGLRKRWEGLVHVSELRKEGRVANVADVVAKGQKVKVKVLSFTGTKA
SLSMKDVDQETGEDLNPNRRRNLDTGVAGVSGDEAMRNPDRPVEASVLELEENPTERKRL
TKITDLEKWEIKQMIAANVLPKEEYPEFDEQTGILPKTEDDEDEEVEIDLVEEEPPFLRG
QTKFSTNMSPVKIVKNPDGSLSQAAMMQNALAKERRELKQAARNAEMDCIPTGLHKNWID
PMPDYEGRQIAANMRGIGAMPIDLPAWKRYAFGGNQVSYGKKTELSILQQRESLPIFKLK
DELVQAVHDNQILIVVGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVS
EEYGCRLGQEVGYTIRFEDCTSTETVIKYMTHGMLQRECLIDSDMSQYALIMLDEAHERT
IHTDVLFGLLKKTIQKRKDLKLIVSSATLDAVKFSQYFFEAPIFTIPGRTFPVEILYTKE
PETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACELLYERMKSLGPDVPELIILP
VYSALPSEMQTRIFDPAPPGSRKVIIATNIAETSLTIDGIYYVVDPGFVKQIVYNSKTGI
DQLVVTPISQAQAKQRSGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLS
LKAMGINDLLAFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCK
MLIMSVHLGCSEEMLTIVSMLSVQNIFYRPKDKQALADQKKTKFFQLEGDHLTLLAVYNS
WKNNKFSNPWCFENFIQARSLKRAQDIRKQMLSIMDRHKLDVVSCGKATVRVQKAICSGF
FRNAARKHPHDGYRTLIDQQVVYLHPSSTLFNRQPEWLVYHELVLTTKEYMREVTTIDPR
WLVELAPAFYRVGDPTRLSYQKRQQKLEPLYNRYEEPNAWRISRAFRRR
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggctgctttggacgaaatcaaacgtctagaatatttatctctggtgtcaaaggtgtgc
acggagttggagaatcatctgggaatatgcgagaaagatctggctgaattcatcatcagt
ctggctgataaacacccaacatttgaggagttcaaagcagttctgtgtgagaatggagca
gattttacagacaccctcgttggtaacttacttaggcttattaataccatgcgatcctca
ccatctacaagtaaagaggtcaaggcaaagaatgagcaggacaggctgaaagagaaatac
cctgctttatgtaaaccagacgctgctgcatggacgattccaccacgacacccggataaa
gatgatgagaaagttgcagctgcagccatgagggagctggagatgcttatgccaaacatc
tgtggaacgagctcagctgacaggaatgtgcacagtgacagaggtcgagatacggacaga
gaaagcgggtgtaagcgaagccgttctagctcaaaagatcgtgatggagacacaaacccg
aagcataaaaggaaacggccgtcacgctggagtgaccatccaccgagcccacgcagagac
gacggcgacaacaacaacaacaacaacaaggacgacagagactctgaccgctggcgagac
agacttgtagatcgacctccgccagacgagcctgttgtgggcgacatctacagcggcaaa
atcagcagcattatgcagtttggttgttttgtgcagctggagggtctcaggaaacgctgg
gagggtctggttcacgtctctgagctgcgcaaagaaggacgtgtcgccaatgtggctgac
gtagtcgccaaagggcagaaggtgaaggtcaaagttctgtcattcaccgggaccaaagcc
agcctcagcatgaaggatgtcgaccaggagacgggggaggacctgaaccccaatcggaga
cgaaacctggacactggagtcgctggagtctctggagacgaagccatgaggaaccccgac
cggcctgttgaagcctccgtcctggaattagaggagaacccaacagaacgcaagcggctc
accaagatcactgacctggagaaatgggaaattaaacagatgatcgcagccaacgtcctt
cctaaagaagagtacccagaatttgacgagcagacgggaatccttcccaaaacagaagat
gatgaagatgaagaagtggagatcgacctggttgaagaggaaccgccgttcctgagggga
cagactaaatttagcacgaacatgagcccggtcaagatagtgaagaatccagatggctcc
ctctctcaggcggccatgatgcagaacgctctcgctaaggagaggagagagctgaagcag
gcggcccgcaacgcagagatggactgcatcccgaccggtctccacaagaactggatagac
ccgatgcctgactatgaaggaaggcagatcgctgccaacatgagaggcatcggcgctatg
cccatcgatcttccagcgtggaagagatacgccttcggtgggaaccaggtgtcgtatggc
aagaagacagaactctccatcctgcagcagagagagagtctgcccatcttcaaactgaag
gacgagctcgttcaggccgtccacgacaatcagatcttgattgtagttggagaaacgggt
tctggtaagaccacccagatcactcagtacctggcagaggcaggttacacctccaggggg
aagatcggctgcacgcagcctcgtcgtgtagccgccatgtcggtggccaagagagtctct
gaggagtacggctgccgtctgggccaagaagtgggctacaccatccgctttgaggactgc
accagcacagagacggtgatcaagtacatgactcatggaatgctgcagagggagtgtctg
atcgactcggacatgagccagtacgccctcatcatgctggatgaggctcatgagagaaca
atccacaccgatgtgctgtttggcctcctcaagaagacgatacagaaacgcaaagacttg
aagctgatcgtgtcctcagcgacgctcgatgccgtcaagttctcacagtatttcttcgaa
gctcccatcttcaccatcccggggagaaccttcccagtggagattctctacaccaaagag
cccgagacagactacctggacgccagtctcatcactgtgatgcagatccatctaactgag
cctccaggtgacatcctggtgtttctgaccggacaggaggagatcgacaccgcctgtgag
ctcctgtatgagcgtatgaagtctctggggcctgatgttcctgagctcatcattctgccg
gtttattctgctctgcccagtgagatgcagaccaggatcttcgaccctgcacctccaggc
agcagaaaggtcatcatcgccacaaacatcgccgagacgtctctgactattgatggcatc
tattacgtggtggatccgggctttgtcaaacagatcgtgtacaattccaagacgggcatc
gaccagctcgtggtgacgcccatatcacaggcccaggccaagcagaggtccgggcgagct
ggcagaaccggcccggggaagtgttacaggctctacactgagagagcctacagggacgag
atgctgaccaccaacgtgcccgagatccagagaaccaacttggcctccactgtgctgtct
ctgaaggcgatgggtattaatgacctcctggcgttcgacttcatggacgcccctccgatg
gagactctgatcacagccatggagcagctctacactctgggagctctggacgatgaaggc
ttactcacacgtctgggaagaaggatggctgagttccctctggagcccatgttgtgtaag
atgttgatcatgtccgtccatctgggctgcagtgaagagatgctcaccatcgtctccatg
ctgtctgtgcagaacatcttctacagaccaaaggacaaacaggctcttgccgaccagaag
aagacaaagttcttccagctggagggcgaccacctcacgctgctggccgtctacaactcc
tggaagaacaacaagttctccaacccgtggtgcttcgagaacttcatccaggctcgctcc
ttaaagagagctcaggacatccgcaagcagatgctgagcatcatggacagacacaagttg
gacgtggtgtcttgtgggaaagcgacggtgcgggtccagaaagccatctgcagcggtttc
ttcaggaacgcagccaggaagcacccgcatgacgggtaccgtaccctgatcgaccagcag
gtggtgtacctccacccctccagcacactcttcaaccgccagccagagtggctcgtctat
cacgagttggtgctgaccaccaaggagtacatgcgggaggtgaccaccatcgaccctcgc
tggctggtggaattggctccggctttctacagagtcggcgacccgacgcgcctcagctac
cagaagaggcagcagaaactggagccgctctacaaccgatacgaggagcccaacgcctgg
aggatctcccgcgccttcagacgccgctga
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