Acanthopagrus latus (yellowfin seabream): 119010173
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Entry
119010173 CDS
T08233
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b isoform X1
KO
K06236
collagen type I alpha
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04510
Focal adhesion
alat04512
ECM-receptor interaction
alat04518
Integrin signaling
alat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119010173 (col1a1b)
04518 Integrin signaling
119010173 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119010173 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119010173 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alat00536
]
119010173 (col1a1b)
Glycosaminoglycan binding proteins [BR:
alat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119010173 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
119010173
NCBI-ProteinID:
XP_036938011
LinkDB
All DBs
Position
20:21238900..21265002
Genome browser
AA seq
1448 aa
AA seq
DB search
MFSFVDIRLALLLSAAVLLARGQGEDDSAPGSCTLDGQAYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCADPIIPDGECCPICPDTEGPQIPQEPTVGDVGEKGDRGLPGPPGND
GLDGQPGLPGPPGPPGPPGLGGNFSPQMSYVDHSKSSGPPQPGPMGPMGPRGPPGPPGSS
GPQGFTGPPGEPGEPGASGPMGARGPAGPPGKNGDDGEPGKAGRPGERGAAGPQGARGFP
GTPGLPGIKGHRGFSGLDGAKGDSGPAGPKGEPGAPGENGVPGSMGARGLPGERGRPGPP
GPAGARGNDGNTGPGGPPGSTGPAGPPGFPGGAGAKGETGPQGARGGDGPQGARGEPGNP
GPAGPAGPAGAPGTDGSPGAKGAPGAAGIAGAPGFPGARGPAGAQGAVGAPGPKGNNGDH
GPPGPKGEPGAKGEPGPAGVQGLAGPSGEEGKRGPRGEPGGAGARGPPGERGAPGARGFP
GADGAAGGKGAPGERGAPGAMGAQGATGESGSPGAPGAPGSKGMTGSPGSPGSDGKAGPS
GAQGQDGRPGPPGPSGPRGQPGVMGFPGPKGAGGEAGKAGERGAAGPSGAVGAPGKDGDV
GAPGPSGVAGPAGEKGEQGPAGPPGFQGLPGPQGATGETGKPGEQGAPGEGGPPGPSGPR
GDRGFPGERGAPGVAGPTGPRGAAGPAGNDGPKGEPGAAGAPGGQGAPGMQGMPGERGAS
GLPGVKGERGDAGGKGGEGAPGKDGIRGMTGAIGVPGPPGAQGEKGEPGPLGVAGPTGPR
GAPGDRGEAGPAGPAGFAGPPGADGQPGAKGESGDTGPKGDAGAPGPGGPVGAAGPQGPA
GPPGPKGARGGAGSPGATGFPGPAGRVGPPGPAGASGAPGPAGPVGKDGARGARGETGPA
GRPGEAGAAGAPGPGGEKGSPGADGAPGAPGPPGPSGIAGQRGIVGLPGQRGERGFPGLP
GSSGEPGKQGPSGLVGERGPPGPAGPPGLSGPTGEAGREGSQGHDGAPGRDGAPGSKGDR
GESGMAGPPGAPGAPGAPGAVGPSGKTGDRGETGAAGPAGPAGPAGVRGPAGPAGAKGDR
GEAGEAGERGHKGHRGFTGMQGMPGPAGASGERGPAGASGPAGPRGPSGSNGAPGKDGMN
GLPGPIGPPGPRGRNGEMGPAGPPGPPGPAGPPGPPGSGFDFVSQPLQEKAPDPYRGGGY
RADDPSMMRDRDMEVDTTLKTLTQKVEKIRSPDGTQKSPARMCRDLRMCHPEWKSGMYWV
DPNQGSALDAIKVHCNMETGETCIYPSQSSIPMKNWYLSKNIKEKKHVWFSESMTGGAQF
QYGTDGADTEDVNIQMTFMRLMSNQASQNITYHCKNSIAYMDASTGNLKKAMVLGGSNDV
EIRAEGNSRFTYTVSEDGCTSHTGSWGKTVIDYKTTKTSRLPIIDIAPMDVGAPDQEFGV
EIGPVCFL
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgctgctgctcagcgcagcggtacttttggcc
agaggtcaaggcgaggatgatagcgcacccggcagctgcacattagatggacaggcttac
aacgataaggatgtatggaaaccagagccctgccagatctgcgtctgcgacagcggaacc
gtcatgtgcgacgaggtgatctgcgaggacacatccgactgcgccgaccccatcatccca
gacggagagtgctgccctatctgcccagacaccgagggaccccagattccccaagagcca
acagtcggagacgttggtgaaaagggagacaggggtcttcccggtcctcctggcaacgat
ggactcgacggacagcccggcctccccggcccacccggcccccctggcccccctggcctt
ggcggaaacttctctcctcaaatgagctatgttgaccactccaaatcaagcggcccaccc
caacccggcccaatgggtcccatgggtcctcgtggtcctcctggaccccctggctcctct
ggtcctcagggtttcactggcccccctggagagcccggtgagcccggagcttctggtccc
atgggtgctcgtggtcccgctggcccccctggaaagaacggagatgatggtgagcctggc
aaagctggtcgccccggtgagcgtggagctgctggacctcagggagctcgtggattcccc
ggaacccctggactccccggcatcaagggacacagaggtttcagcggtctggatggagcc
aagggagacagcggacctgctggccccaagggagagcctggtgcccctggtgagaacggt
gtccccggtagtatgggtgctcgtggtctccctggtgagagaggccgccccggacctcct
ggacctgctggcgctcgtggtaatgatggcaacactggccctggtggacctcctggatct
actggacccgctggtccccctggattccccggtggtgccggtgctaagggagagaccggt
cctcagggagctcgtggtggagatggaccccagggagctcgtggtgagcccggaaaccct
ggacctgctggacccgctggacctgctggtgcccccggaaccgatggttcccccggtgct
aagggtgctcctggtgctgctggtattgctggtgctcctggtttccccggtgctcgcggc
cctgctggagctcagggagctgttggtgctcctggtcccaagggtaacaacggtgaccat
ggtccccctggacctaagggagagcctggtgccaagggagagcctggccccgctggagtt
cagggacttgctggcccctctggtgaggaaggaaagagaggaccccgtggagagcctggt
ggtgctggagcccgtggaccccctggagagcgtggtgcccctggtgctcgtggtttccct
ggtgctgatggagctgctggtggaaagggtgcccccggagagcgcggtgcccctggcgca
atgggagctcagggagccactggtgagtctggtagccccggtgctcctggtgcccctgga
tccaagggtatgactggtagccctggcagccctggctctgatggcaaagctggaccttct
ggtgcccaaggacaagacggacgccctggacctcccggcccctctggacccagaggacag
cccggagtgatgggattccccggacccaagggagctggtggtgaggctggcaaggctggc
gagagaggtgccgctggtccctctggcgctgttggtgctcctggtaaagatggtgacgtt
ggtgctcctggaccttctggtgttgctggacctgctggagagaagggagagcagggaccc
gctggtcctcccggattccagggacttcctggaccccaaggtgctactggtgagactggc
aagcctggtgagcagggtgctcctggtgagggtggaccccctggcccatctggaccaaga
ggcgacagaggtttccctggtgagcgtggtgctcctggtgttgctggaccaactggaccc
cgtggtgctgctggccccgctggtaacgatggacccaagggagagcccggtgctgctggt
gcccctggtggtcagggagcccctggtatgcagggaatgcctggtgagcgcggagcttct
ggtctccccggagtcaagggagagagaggagatgctggtggcaagggaggtgagggcgct
cctggcaaagatggcattcgtggtatgactggtgctatcggagtccctggacctcctggt
gctcagggtgagaagggtgagcctggaccccttggagttgctggacccactggacctcgc
ggtgcccctggtgaccgtggagaggccggacctgctggacctgctggattcgctggacct
cctggtgctgatggtcagcctggtgctaagggagagtctggtgacactggacccaaggga
gacgctggtgcccccggacctggtggacctgttggagctgctggacctcagggacctgct
ggtcctcctggacccaaaggtgctcgtggtggtgctggatctcctggtgctactggtttc
cctggacccgctggcagagtcggaccccctggccccgctggagctagtggagcacctgga
cccgccggacccgtcggcaaagatggagcaagaggagcccgtggtgagaccggtcccgct
ggtcgccccggtgaggctggtgctgctggagccccaggaccaggtggagagaagggatct
cccggtgctgatggtgcccccggtgctcctggaccccccggaccctctggtattgctgga
cagcgtggtattgtaggtctccccggacagcgtggagagcgtggtttccccggcctgcct
ggaagctctggtgagcctggaaagcagggaccatctggacttgttggtgagcgtggaccc
cccggacctgctggaccccctggactgtctggtcccaccggagaggctggtcgtgaggga
tctcagggacatgatggtgcccccggtcgtgatggagcccctggatccaagggagaccgt
ggtgagtctggtatggctggacccccaggagcccctggtgctcctggtgcccccggagct
gttggcccctctggcaagactggtgaccgtggagagactggtgctgctggtcctgctggc
cctgctggtcctgctggagtccgtggtcctgctggccccgctggagctaagggagacaga
ggagaggctggtgaggctggagagagaggccacaagggacacagaggcttcactggcatg
cagggtatgcccggacctgctggtgcttctggagagagaggacccgctggtgcctctgga
cctgctggacctcgtggaccatctggatctaacggcgctcccggtaaggatggcatgaac
ggtctgcccggacccatcggaccccctggacctcgcggtcgcaatggagagatgggacct
gctggtcctccaggacctcccggacccgctggaccccctggacctcccggcagtggattc
gacttcgtcagccagcccctgcaggagaaggctcccgatccctaccgtggtggcggatat
cgcgctgatgaccccagcatgatgcgcgatcgcgacatggaggttgacaccaccctcaag
accctgacccagaaggtcgagaagatccgcagccccgacggtacccagaagagccctgct
cgcatgtgccgcgacctgaggatgtgccaccccgagtggaagagcggcatgtactgggtc
gaccccaaccagggatctgccctggacgccatcaaggtccactgcaacatggagactggc
gagacctgcatctacccaagccagtccagcatccccatgaagaactggtacctcagcaag
aacatcaaggagaagaagcacgtctggttcagcgagtccatgaccggtggagcccagttc
cagtatggcaccgatggagctgataccgaggacgtcaacatccagatgaccttcatgcgc
ctgatgtccaaccaggcctcccagaacatcacataccactgcaagaacagcatcgcctac
atggacgcctccaccggcaacctgaagaaggccatggtgctcggaggctccaacgacgtc
gagatcagagccgagggcaacagccgcttcacatacaccgtcagcgaggatggctgcacg
tcacacactggctcatggggcaagacagtcatcgactacaagacaacgaaaacatcccgc
ctgcccatcattgacattgctcctatggatgttggtgcacctgatcaggagtttggcgtc
gaaattggcccagtttgcttcttgtaa
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