Acanthopagrus latus (yellowfin seabream): 119011009
Help
Entry
119011009 CDS
T08233
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03008
Ribosome biogenesis in eukaryotes
alat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119011009 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
119011009 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119011009 (xrn1)
03009 Ribosome biogenesis [BR:
alat03009
]
119011009 (xrn1)
03016 Transfer RNA biogenesis [BR:
alat03016
]
119011009 (xrn1)
03036 Chromosome and associated proteins [BR:
alat03036
]
119011009 (xrn1)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
119011009 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
119011009 (xrn1)
Ribosome biogenesis [BR:
alat03009
]
Eukaryotic type
Pre-60S particles
RNases
119011009 (xrn1)
Transfer RNA biogenesis [BR:
alat03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
119011009 (xrn1)
Chromosome and associated proteins [BR:
alat03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119011009 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
119011009
NCBI-ProteinID:
XP_036939623
LinkDB
All DBs
Position
21:4489099..4522408
Genome browser
AA seq
1705 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALDKGE
VLPTEARFDSNCITPGTDFMARLQEQLEYFVHNKLSTDKLWQNVRVYLSGHETPGEGEHK
IMEFIRSENRKPSHDPNTRHCLYGLDADLMMLGLTSHEPNFSLLREEVRFGGKKNQKRIT
APEETTFHLLHLSLMREYIDYEFSELRKHIGSDYDLERIIDDWILMGFLVGNDFIPHLPH
LHISHDALPLLYKTYISVLPSLGGYLNENGHLNLRNFEKYLEKLSEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEKEAASKEANQKEDSALCLAALTSSDKVIGEGKGDDEEEED
DMFETEFRQYKRTYYMTKMGVDVVSDEFLAKQARCYVEGIQWILHYYYHGVQSWSWYYPF
HYAPFLSDIRNIAGLKLTFDLGKPFMPFQQLLAVLPAASMELLPQAYRHLMTNENSPIIE
YYPLDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMDPCNHKLTKQEKARNCHTECAVYTY
DQEADITYSSSLPQLFPDIIHCHVRKEHIPMDAWHVPLDHVSRPFDRSSLYFCGFPTLQH
IRHKFYKKKSGVVVFQQSSRGENTILDILPSKEGEAVCDDVATQVLGKSVFVNWPHLEEA
RVIAVSDGEVKFCLEEPPGVQKVYDRPSTPPPTKVTCLSDKEQKDWVKDVQGITEHFLKR
KGIVVNETTVLLYGQLLTGRKYVPKANGVVELEKQWAKQVLPFAYQTVVKDIKAFYSSLT
CFKSLDELFPPTTTVFMVGNPYYGAMGEVQDSSDVIKDGRVRVVFNVPHEPQLETLIQNQ
HKYCVKYSPGYVLASRLGITSYLVSRFSGSIFIGRGSKKNPCGEQKANVGLNLKFNKKNE
EVPGYTKRTEKEWLYSVAVEELLAEYLDRFSEVFNAVSRNSHDDVFYEDDIWPGLDQNGA
EKVAEITSWLKSHPVSSVSRTSCELQVLDTAIVERIEEAVEKTKVKKSTKKVRVTVKPHL
LYRPLEQQQGVVPDPDSEYRLFDRVVNIRESFTVPLGLRGTIIGIKGAEREAEVLYEVLF
DEEFAGGLNIRCTSPRGYRVPPCALINLSHGGRVDHTSHKLTAIVKPQPAAATSFNSQRQ
LGGLNHSPRSPFIPMQHNNKHSAVKAASQGNRNSPSKGLNQKQQAKSKSEYNNVWQALQS
SGPPQQPPAHWHNNEGQSQQDGNQHSNKAAPVGGIRLLKKNEDTNCLFPTQNTANKATTE
FEDLIASLKISTGNQQTTTPAAPPQVPNSQSEGPLSPQSFAMKGTLMLKEMLKIDSAGAG
SHSSQEAANSATYGGQQQNRRRSSKKLAANMNSPHSDSPATAAPTNLSNSMLGSKVSELA
HVCVGLGLAPPDFSFIGNRQGPVVCQVKLSNGLMVHGPQCQSENDAKERAAFFALQRLNS
VGSGFPLPPPLYPGVGQIRPPPIGVFNQQGGLLLPPQGYPPAPLWGMPLPPHHHHHQSQP
YYGAVGTFPGAARQQPAAGPPIGSHNQFIPLQVTKKRASANKKNQETREFYNASHTVARN
QTQRAQNQLSDQSQSGKVDQPHQHTTNSNPSPSSPGLADAVSMSTAAPHTPPRQNRPATG
HTPSSASKRKHRKLAVNFEAAKVSE
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccaaaattttaccgatggatatccgagcgatatccttgtcttagtgaagtt
gtcaaggaacatcagattccagaatttgacaatctctatctggacatgaatgggattatc
catcagtgttcccacccgaatgacgaggatgtccactttcgcatttctgaggaaaagatt
tttgctgacatcttccattacctggaggtgctcttcaggatcatcaagcctcgcaaggtc
ttcttcatggcggtggatggtgtggcaccaagggcaaagatgaaccagcagaggggacgg
agattcaggtctgccaaagaagcagaggacaagataaaaaaagctctggataaaggagag
gtgcttcccacagaggctcgctttgactccaactgtatcacccctggcactgacttcatg
gcaagactccaggagcagctcgagtattttgtccacaacaagctctccaccgacaagctg
tggcagaacgtcagagtctacctgtctggtcatgagactccaggagagggagagcataag
atcatggagtttattcgctctgagaacaggaagcccagtcatgaccccaatacccgacac
tgcctgtacggcctggatgctgacctgatgatgttgggtttaaccagccacgagccaaac
ttctccctgctcagagaggaagtccgctttggaggaaagaaaaaccagaagaggataact
gctccggaggaaacaacttttcacctacttcacttgtctctcatgagggagtacattgac
tacgagttctctgagctcaggaaacacattggttctgattatgacttggagcgaataata
gacgactggattctaatgggcttcctcgtgggaaacgattttatccctcacctccctcat
cttcacatcagccatgatgcattgccactgctgtacaagacctacatcagtgttctgccc
agcttggggggttatctgaatgagaatgggcacctaaacctcagaaactttgagaaatac
ctggagaagctttctgagttcgaccgggaacatttcagcgaggtgtttgtggacttgaag
tggtttgagagcaaagttggtaacaagtacctgaatgaagctgctggactggctgcagaa
aaggaagctgccagcaaagaagccaaccagaaagaggattccgccctctgtctcgcagcg
ctgacatcatcagacaaagtgattggagaaggaaaaggtgatgacgaggaggaggaggac
gatatgtttgaaacggagttcagacagtacaagcgcacctactatatgaccaagatgggc
gtggatgtggtgtctgatgagtttctagccaagcaggccaggtgttatgtggaaggtatc
cagtggatcctgcactactattaccacggggttcagtcctggagctggtactaccccttc
cactacgctcccttcctgtctgacatcaggaatatagctgggttaaagttgacctttgac
cttgggaaacccttcatgcccttccagcagctgttggcagtcctgcctgctgccagcatg
gagctgctgcctcaggcttacaggcacctgatgacaaatgagaattctcccattatcgaa
tactaccctcttgactttaaaactgacctcaatggaaaacagcaggagtgggaggcagtg
gttctcattcccttcatagatgagaggtgcttgctagcagccatggatccctgtaatcac
aagctgactaaacaggagaaggccaggaattgtcacacagagtgtgcagtctacacatat
gaccaggaggctgacatcacatacagctcgagcctgccccagctgttccctgacatcatc
cactgccatgtcaggaaggaacacatccccatggatgcctggcatgtacctttggaccat
gtctccagacccttcgaccgctcatctctgtacttctgtggctttcccacactacaacac
attaggcacaagttctataagaagaagagcggggtggttgtgttccagcagagcagcaga
ggggagaacaccatactagatatcctccccagcaaggaaggagaggcggtatgtgatgat
gttgccacacaagtattggggaagtcagtgttcgtcaactggccacatctagaggaagct
cgcgtcattgcagtgtcagatggggaagtcaagttttgtcttgaggaaccacctggtgtc
caaaaagtgtacgaccggccctccactcctcctccaaccaaagtcacctgcctgtctgac
aaagaacagaaggactgggtgaaggatgtccagggaatcactgagcatttcctgaagagg
aaaggcattgtggtgaatgagacaacggtgcttttgtacggccagttgctgacaggaagg
aaatacgtccccaaagccaacggggtggtggaactagagaagcagtgggctaagcaggtc
ctcccatttgcctaccagaccgtggttaaggacatcaaggccttttactcatctctgacc
tgcttcaagagcttagatgagctcttccctcctacgaccactgtcttcatggtggggaac
ccttactacggtgccatgggcgaggtacaagactccagtgatgtcatcaaagatggtcgg
gttcgagtggtatttaatgtgccgcacgaaccacagcttgagaccttaatccagaatcag
cataagtactgtgtgaagtacagccctggatacgttctggcatctcgtcttggaatcacc
agctacctcgtgtcccgcttctcaggaagcatctttattggaagaggctccaagaaaaat
ccttgtggggagcagaaagctaacgtcggtctgaacctgaagttcaacaagaagaacgag
gaggttcctgggtacaccaagaggactgaaaaggagtggctctactctgttgctgtggag
gaattgctagcggaatatctggacagattttctgaggtattcaacgcagtgtccagaaac
agccatgatgatgttttctatgaagatgacatatggcctggattggaccagaatggggca
gagaaggttgctgaaatcacttcatggttgaaaagtcacccggtgagctccgtcagtaga
acatcatgtgaactacaggtgctagacactgccattgtggagaggattgaggaggcggtg
gaaaaaaccaaggtgaagaagagcaccaagaaagtccgtgtgacagtcaagcctcatctc
ctctacaggcccttagagcagcagcagggtgtggttccagacccggattcagagtatcgc
ctgtttgacagagtcgtcaacatcagggagagcttcaccgtcccactgggactgagagga
acaatcatcggcattaaaggagctgagcgtgaggcagaggttctctatgaagtgcttttt
gatgaagaatttgctggaggtctcaatatcaggtgtacgtcgcctcgtggttaccgcgtc
cctccctgcgctctcatcaacctttcccatggaggacgagtggatcacacctcccacaaa
ctcactgccatagtcaaacctcagcctgccgccgccacaagcttcaactctcagcgccag
ctgggtggcctaaaccactccccacgttcaccctttatacccatgcagcacaacaacaaa
cacagtgcagtgaaggcagcctcccagggcaacaggaactctccctctaagggtctcaat
cagaaacaacaggccaagagtaaatcagagtacaataatgtgtggcaggctctgcagagc
tctggcccccctcaacaaccacctgctcactggcacaataatgaaggacagtcacaacag
gatggaaaccagcactccaacaaagctgccccagttggtggcatcagactgttgaagaaa
aatgaagataccaactgccttttccccacacagaacacagccaataaggctacaactgag
tttgaggacctcattgccagtctcaagatctccacgggtaaccagcagaccacaactcct
gctgctccgccacaggtacccaacagccagtcagagggcccgttgtctccgcagtccttc
gccatgaagggaactctgatgttgaaggagatgctcaagattgacagtgctggagcagga
agtcactcctcccaggaggcggctaacagtgccacctatggaggccagcagcagaacagg
agacgatcatccaagaaactagcagcaaatatgaactccccacacagtgattctcctgcg
accgctgccccaaccaacctctccaactctatgcttggcagtaaggtgtcagagctggcg
cacgtctgtgtggggttggggttggcaccacctgatttcagcttcataggcaacagacag
ggtccagttgtgtgtcaggtgaagctttccaatgggttgatggttcatggtccacagtgc
caatcagaaaatgatgccaaggagagagctgccttctttgccctccaaagactgaactca
gtgggatcaggcttccccctccctcctccactatacccaggagtaggtcagatacgaccc
ccacccataggagtcttcaaccaacaaggtggtttgctattgcctccccagggttatccc
cctgcccctctgtggggaatgccattgcctcctcaccaccaccaccaccaaagccaacca
tattacggagcagtgggaaccttccctggtgctgcccgccagcaacctgcagcaggacca
cccattggctcacacaatcagtttattccattacaggtgactaagaagcgagcctcagct
aacaagaagaaccaggaaactcgagagttttacaatgccagccacaccgtggccagaaac
caaacacagagagcccagaaccagctctctgaccaatcacagagcggtaaagtggaccag
cctcaccaacacaccaccaacagcaacccgtccccgtccagccctggcctagcagatgct
gtttccatgtcaacagcagccccacacacaccccctcgacaaaacaggccagcaactggc
cacacccccagctctgcctccaagaggaaacacagaaagctggcggtcaacttcgaggca
gctaaagtctctgagtga
DBGET
integrated database retrieval system
