KEGG   Acanthopagrus latus (yellowfin seabream): 119011108
Entry
119011108         CDS       T08233                                 
Name
(RefSeq) collagen alpha-4(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
alat  Acanthopagrus latus (yellowfin seabream)
Pathway
alat04382  Cornified envelope formation
alat04510  Focal adhesion
alat04512  ECM-receptor interaction
alat04518  Integrin signaling
alat04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:alat00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    119011108
   04518 Integrin signaling
    119011108
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    119011108
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    119011108
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    119011108
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:alat04147]
    119011108
   00536 Glycosaminoglycan binding proteins [BR:alat00536]
    119011108
Exosome [BR:alat04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   119011108
Glycosaminoglycan binding proteins [BR:alat00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   119011108
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 119011108
NCBI-ProteinID: XP_036939844
LinkDB
Position
21
AA seq 1670 aa
MGSSGTAVTLCPLRFIVILAILVQQLNAGGDDGPCQGRDCSVCQCLPAKGARGAPGKPGQ
QGSRGPMGPRGQEGRPGEKGRRGTEGPHGPEGPKGSRGKTGAPGFPGHDGLAGHPGAGGE
PGLPGVDGCNGTRGRQGAPGIPGWDGLHGPRGLTGPKGIKGEPLHDGSLAGHPGERGREG
ERGRPGKKGGIGTRGFPGLRGSPGFEGPAGPDGARGPPGDPGGSLAGDIGDDGEQGQPGP
QGPEEVIEFPPEFLPPKGLKGDQGPPGPCGPKGIHGGRGDYSQVIKGEQGILGFPGNRGL
SGFPGRDGTPGPEGLRGEKGLPGLIGRTGPRGYQGDPGPPGPVEFLNGGDVRGAKGDRGF
PGTPGDPGDPGLMGMHGPPGAPGLITSEEPGQPGPPGPPGTKGYKGEPGGYGNYEINPFV
GPKGPKGHIGPKGIQGPPGRPGCGDYYCEPGYPGDPGDPGPRGSDGNKGLKGIKGCPGEC
ECGSGGGRAGPPGPPGFTGPPGFPGAPGLKGDPGQQGDEGPSGPQGFQGMPGFKGRKGQK
GDSFIAGVEGAKGDQGVPGHSGPPGVTGSPGLDGLPGPEGDPGPPGAGYVGIRGPKGNPG
AAGLKGFPGLLGPPGPAFPGSKGPAGPKGNPGFPGRPGVPGRPGPPGEIEICCHEQETGL
PGPKGEPGAPGIPGDPGLDGVPGPDGHPGPKGLKGDDSDVGGVGPPGPRGLNGDPGNPGP
SGLSEDGPPGPPGSPGYPGRKGAPGDVFSATQGPPGPPGLPGALGPKGPRGIRGSPGSPG
QPGQPGYKGRPGVIGDPGDIGPPGQPCTICDLYGPPGPPGPPGNPGLRGIPGYYGPKGLK
GDIGLPGRGPRGPQGFPGPPGLPGPAGARGTAGSPGDPGIGGWPGQKGERGYSGRTGASG
LPGPPGPPGPRGKQGERGLDGHPGVPGYPGPPGSKGVHGLPGLPGPATIVNVTKGPSGLL
GRQGPPGQPGFEGSRGPRGLLGDSGRDGLHGLPGIKGIPGAPGRGGFPGPPGYPGIKGFP
GPRGYVGYVGDPGDPGHIGNPGIPGFPGLPGPKGEPGVLRGQPGPPGPKGLSGEDGPSAP
RGSPGDPGEPGPPGRSGQPGQRGIPGEPGRQGGPGRPGPHGPTGRPGVPGVPGDHGGLGP
PGPPGPNGPQGLPGPRGLDGLNGLRGPKGIKGTSGTGIPGPQGPDGSPGVKGHMGHQGPP
GVTFPGPKGQRGPPGNTGTPGFPGEPGYPGKDCQERTPGPYGDVGYEGPPGPPGFPGNPG
PPGSTLFYKGDPGRIGLPGLPGHKGVKGLPGPPGSPDHPGSRGPKGERGPAGPRGYPGSK
GQQGAPGPWGRKGITGPAGDGGVKGARGDSINGPLVQAPLGPPGPPGFPGSAGFIGDVGP
PGTPGRKGEKGPRGSVGPPGLTGPPGLNGPVGDPGDIGQRGFVGPQGIPGTPGDPGQPGS
REVLRSGYLLVIHSQSVKVPLCPDGSSQLWVGYSLVYLEGQEKAHTQDLGQAGSCLPVFS
TMPFSYCNKAACHFSSRNDKSYWLSTTAPIPMMPLSGQEIRSHISRCAVCEAVAPAVALH
SQDHEVPACPLGWRSLWTGYSFLSHTGAGDEGGGQSLTSTGSCLKDFRTHPIIECQGARG
SCHYFANLYSFWLTTISPTEQFITPRPGTIKAVDEQRSRASQCHVCLRDR
NT seq 5013 nt   +upstreamnt  +downstreamnt
atgggatcgtcaggtactgctgtgactctgtgtcccctcaggtttatcgtcatcctggcc
atcttggtgcagcagctaaatgcagggggggatgatggcccatgccaagggagggactgc
tccgtatgtcagtgtcttcctgccaaaggtgcacggggcgctccagggaagccgggccag
caaggctcccgtggaccaatgggaccaaggggacaggaagggcgacccggagagaaaggc
aggaggggcacagagggaccacacggcccagaggggcccaaaggaagccgtggcaagact
ggtgctcctggtttccctggccatgacggtttggcaggccaccctggagcaggaggtgag
cccggtctgccaggagtagatggctgcaatgggacaagaggtcgacaaggtgcccctggt
attccaggctgggatggtctccatgggccgcggggattaactggacctaaaggaattaaa
ggggaacctttgcatgatggttcacttgcgggacatcctggggagcgcggcagagaggga
gagcgcggtcgacctggtaaaaagggaggcattgggactcgaggcttccctggtcttcgt
ggatctcccggatttgagggcccggccggacctgacggtgcaagaggaccacctggcgac
cctggaggatcactggcaggcgacataggcgacgatggtgagcaaggacaacctggccca
caaggaccagaagaagtcatagaattccctccagaatttcttccacccaaaggtctcaag
ggggaccaaggccctcctggaccatgtggaccaaagggcatacatggtggtagaggagac
tacagtcaagttattaaaggagagcaaggaatccttggttttcctggaaatcgaggtctc
tcaggatttcctggtagagatggaacgccaggaccagagggtctccgcggagagaaagga
cttccaggtctcattggaagaactggaccaaggggttaccaaggagatccaggtcccccc
ggtcctgtggaatttcttaatggaggtgatgtcagaggtgcaaaaggtgaccgtggattt
cccggaacgcctggagacccaggtgaccctgggctcatgggcatgcatggaccgcctggt
gcaccaggattaataacatcagaggagccaggtcagcctggtccaccagggccacctggt
accaagggctacaagggagagccaggagggtatggtaactatgaaatcaatccgtttgtg
ggaccaaaaggacccaaaggacacattggacctaaaggtatccaaggacccccgggtcgt
ccaggatgtggagattactactgtgagcctggatacccaggagaccctggtgatccaggg
cccagaggatctgatggaaacaaagggctcaaaggaatcaaaggttgcccaggggaatgt
gaatgtgggtctggtgggggaagggcagggccccctggtccacctggatttacaggaccc
ccagggtttcctggagctccaggactaaagggagacccaggacagcaaggagatgaaggt
ccaagtggaccacaaggctttcaaggaatgcctggttttaaaggacggaagggtcaaaaa
ggtgactctttcatagcaggtgttgaaggtgccaagggtgaccaaggagtccctggacac
tctggtcctcctggagtaacaggtagtccaggactggatggcctccctggccctgaagga
gacccaggaccaccgggtgctggatatgtaggaatacgcggtcccaaaggtaatcctggt
gctgccggactcaaagggtttccagggcttctaggccctccgggtcctgcttttccaggc
tcaaaagggccagctggacctaaaggaaatccggggtttcctggccgaccaggggttccc
ggacgaccaggccctccaggtgaaatcgagatatgctgtcatgaacaagaaactggatta
cctggtcctaagggtgagccaggcgcaccagggattccaggtgatccagggctagacggt
gtcccaggacctgatggacacccaggtcctaaaggcctgaaaggagatgacagtgatgtt
ggaggggttggacctccaggacctcgaggtttaaatggggatccaggtaaccctggtccc
agtggacttagtgaggatggccctccaggccctcctggttcaccaggatacccaggcaga
aagggtgcccccggagatgtcttctctgccacgcaaggtcctcctggcccacctggcctc
cctggggctctggggcccaaaggacctcgtggcattcgtgggagccccggttctccaggt
caaccaggacaaccaggttataaaggacggccaggagtcattggtgaccctggagacatt
ggtcccccaggccaaccgtgcactatatgtgacctgtatggacctccaggacctcctgga
cctccaggaaaccctggactgaggggaataccaggctattacggtccaaagggtttaaag
ggagacataggtctgcctggtcgtggaccaaggggtccacaaggtttccctggccctccc
ggtttgccaggtccagctggagcaagaggcaccgcaggctcaccaggagatcctggtata
ggcggctggccgggacaaaaaggtgaaagggggtactctggcagaactggggcctcaggt
ttaccaggtcctcctggacctccgggaccaagaggtaaacagggagagagaggcttagat
ggccacccaggtgtcccaggatacccaggaccgcctggtagtaaaggtgtacatggtcta
cctggattaccagggccagcgacgattgtgaacgtaacaaaaggcccatcaggactttta
ggaaggcaaggaccaccagggcaaccaggatttgaaggctcaaggggcccaaggggtttg
ctaggtgattcagggcgtgatggactgcatggtctaccagggattaaaggcatccctgga
gctccaggcaggggaggatttccaggacctccagggtaccctgggatcaaaggattccct
ggtccaaggggatatgttggatatgttggagatccgggtgatccagggcatatagggaat
ccaggcattccaggttttccaggacttccaggacccaagggtgagcccggagtgctccgt
ggacagcctggtccgcctggacccaaaggactgtcaggggaggatggaccaagtgcgccc
cgaggcagtccaggagatccaggtgagccaggacccccaggaaggtcaggacagcctgga
caacggggcattcctggggaaccaggaagacaaggaggaccaggccgtcctggacctcat
ggcccaacaggtcgtccaggcgttccgggtgttccaggtgatcatggcggtcttggacca
ccaggcccacctggaccaaatgggcctcaagggctcccaggaccacgaggtctggatgga
ctgaatgggctgagaggtccaaaaggaataaaaggaacaagtggcactggcatcccaggc
ccccaaggaccagacggctctcctggagtcaaaggacacatgggccaccaagggcctcca
ggtgtcacctttcctgggccaaaaggccagaggggcccacctggcaacacaggtactcct
ggtttcccaggtgaaccaggttaccctggcaaagattgtcaagagcgtacgccaggtccc
tatggagatgttggttacgaggggcctccaggaccccctggttttcctgggaatccaggc
ccaccaggcagcactttattctacaaaggagaccctggccgaattggccttcctgggtta
ccaggtcataagggagtaaagggcctcccaggacctcctggttctccggaccatccaggc
tccagaggtccaaaaggtgagcgcggtcctgctggtccaaggggttatccaggatccaaa
ggtcagcaaggtgcccctgggccttggggtcgcaagggaataactggcccagctggagac
ggaggtgtaaaaggtgctcgtggtgattccattaatgggcctctagtccaggcgcctctg
ggacccccgggaccacctggtttcccaggatctgcaggattcattggcgatgtaggtcca
cctgggactccagggcgaaaaggtgagaagggccctcgagggtcagtgggcccccccggc
ttgacgggtcctcctggtcttaatggtccagttggagacccaggagatattggccaaaga
ggatttgttggacctcaaggtatcccaggtacacctggtgatccaggtcagccaggttct
agggaggtgttgaggtcaggctacctcctcgttatccacagccagtcagttaaggtgcca
ctgtgtcctgatggcagcagtcagctttgggtgggctacagtctggtctacttggaggga
caggagaaggctcacactcaagacctgggccaggctggctcctgcctccctgttttctcc
accatgcctttctcgtactgcaacaaagccgcctgccacttctccagtcgtaatgacaaa
tcctattggctctccaccaccgctcctataccaatgatgccgctctccggccaagagatt
agatcccacattagccgctgtgcggtgtgcgaggcagtcgcgcctgctgtggcattacat
agccaggatcacgaggttcctgcatgcccacttggctggaggagtctgtggacagggtac
tctttcctctcgcacacaggggcaggtgatgagggcggtggccagtctttgacttctact
gggagctgcctcaaggatttccggactcaccccatcatagaatgccagggtgcacgtggt
tcctgccactactttgccaacctctacagcttttggctgaccaccattagtccgacagaa
caatttatcaccccgaggcctggcaccatcaaggcagtcgacgaacagcgcagcagggcc
agtcagtgtcacgtctgcctcagagaccgatga

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