Acanthopagrus latus (yellowfin seabream): 119011109
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Entry
119011109 CDS
T08233
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04510
Focal adhesion
alat04512
ECM-receptor interaction
alat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119011109
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119011109
09142 Cell motility
04820 Cytoskeleton in muscle cells
119011109
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alat04147
]
119011109
00536 Glycosaminoglycan binding proteins [BR:
alat00536
]
119011109
Exosome [BR:
alat04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119011109
Glycosaminoglycan binding proteins [BR:
alat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119011109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119011109
NCBI-ProteinID:
XP_036939845
LinkDB
All DBs
Position
21:complement(20535661..20558067)
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AA seq
1669 aa
AA seq
DB search
MGRPVTVAPLILFAVMLLGTEAKDCVCSGRSRCQCAGVKGSRGDKGLPGAVGPLGPVGRP
GPDGHAGPMGPKGNTGPVGPVGPKGDPGPEGKEGFAGSHGLPGTPGLQGPPGEPGAPGCN
GTDGDDGDPGTDGVRGFDGLPGPPGQPGPKGEPPVSVTAIAGQLGPPGMQGEPGVSGVRG
EQGPQGDPGPRGSDGFPGRSGAPGPKGQEGVGGNLGPHGPKGRPGPVGPPGPPGRIKEFL
SGGLTLKGGKGDRGAAGGKGCKGEPGDPGYAYLTKGAKGDKGQEGPEGKLGKDGDPGIHG
FRGRPGLRGDPGYPGTPGGQGEKGNRGPPGPPGAIQGPLTEPLKGYRGDPGARGHPGLPG
QPGVVGFPGPPGPPGYASGIYVPGPPGPTGYPGEKGDPGEPGGIYHGLPGPDGDVGDPGP
LGDPGPPGPPEDRTNRITKGLPGMKGVRGIPGPMGYDGVFGMKGVKGEPCYNCPAGSGPP
GPRGPPGAHGYTPGPGAKGDPGYPGPRGIPGRPGPTGVAGFPGPPGQKGESSSYDIPGIK
GEKGHPGHPGRPGAGGRPGIPGLPGRKGSQGYPGDSYPITGPEGDRGFPGPTGLQGRPGP
DGYPGPPGYGPVGFPGIKGDDGVPGLPGLPGTPGQKGESGHYHAKGLPGPPGFKGRSGSP
GGRGYNGVPGAPGTPGSPGQKGERGDVTFPGRPGPEGQKGDKGQPGLPGQPGWGLAGRLG
PPGIPGPPGLKGDGGPGYTGPAGLPGRPGADGDQGPVGDPGSPGPPGFPGIIGIPGVPGE
KGNKGLQGLPGPFADKDSCKGLSGPAGPPGPDGSPGHPGASGLTGEKGDAGLPGFGRPGP
PGEPGLIGLSVPGSSGPPGHKGIKGQGGRPGQPGLRGDPGPDGTSGYGPEGLPGVLGPPG
QIGARGPDGARGLPGPPGMHGEPGYRGPPGPASPISIISGPPGDPGDQGQPGLPGPQGDT
GSIGAKGHRGRDGAPGPVGQRGAPGNPGLDGTVHLPGNQGPPGASGDTGFKGLPGPKGIK
GEQGVPGGTGPDGAPGSPGYKGAKGDPGNCGYGVPGPIGQKGEPGLINTDVMKGQKGEPG
VTGPGGIPGYHGAKGNPGPVGHDGPSGYQGPKGSDGPPGAKGHRGPYGPAGHPGPSGIGG
VPGPKGHQGRDGFPGPPGQKGDTIVIGGTPGPHGDPGQPGPAGSPGPPGLSATGYPGPTG
DRGLPGPPGLSGPRGSPGREGACLPGSKGDLGYPGSPGSRGYPGSPGPPGPTVPGLKGEP
GDLGPIGSPGYSGPPGDLGPQGPPGVRGRPGGQGPRGDPGPPGHQGPLGYKGDPGYSPGP
PGPPGMKGFPGRPGLKGEPGIGRWMYKPGPSGLPGPNGNRGPPGIAGPPGPPGRSGRPGI
KGAPGRGPVGPPGFTGHKGDKGRAGLPGPRGRLGDPGNKGPSGLPGRGSPGFVDTFLIAR
HSQSIRVPDCPTGTSLMFSGYSFLFINGNERAHGQDLGTMGSCLPRFSTMPFMFCDTESN
CRYASRNDYSYWLSTDKPMPANMVSITGDGLASYISRCSVCETTSNVIAVHSQTTRIPEC
PRGWESLWSGYSFVMQTGAGADGSSQPLVSPGSCLESFRQVPFIECHGRGTCNYYPDSYS
YWLASLDPKSMFSKTIPRTVKGPSTLDVISRCRVCRKSSSGGDQRRGDN
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgggaaggccggtgaccgtagctcctctgatcctgtttgctgtgatgctgctggggact
gaggccaaagattgtgtatgcagtggaagatcaaggtgccagtgtgccggagtgaaaggc
agccggggagacaaaggtcttccaggagccgtcggtcccctggggccagtgggccgtcca
gggccggatggtcacgccggaccgatgggaccaaagggaaacactgggcctgttggacct
gtgggaccaaaaggcgatccgggacctgaaggaaaagaaggatttgctgggtctcacggt
ttaccgggtaccccaggtttgcaagggcctccgggagagccaggggctccagggtgcaac
ggaacagatggagacgatggagatcctggtactgacggggtccgtggctttgatggactt
ccaggtccacctggtcaacctggacctaagggtgaaccgccggtatcagtgacagcaata
gcagggcaacttggaccacctgggatgcaaggagagccgggagtttcaggtgtccgtgga
gagcaagggccacaaggggaccctggaccgcgaggctctgatggttttcctggtcgttca
ggggctccggggccaaagggtcaagaaggtgtaggaggtaacctaggacctcatgggccc
aagggaagaccagggccagtgggcccaccaggcccaccgggtcggattaaggagtttttg
tctgggggtcttacattaaagggtggaaaaggagacaggggagccgctgggggaaaaggc
tgcaagggggaaccaggagaccctggttatgcctatctcaccaaaggagcaaagggagac
aaaggacaggagggtccagagggaaagctggggaaggatggtgatcctggaatacatgga
ttcaggggaaggcctggcctcagaggcgacccaggatacccggggacaccaggagggcag
ggggaaaagggaaacaggggtccccctggtccacctggagctatacaagggcctctgact
gaacctcttaaaggataccgtggagatcctggtgccagaggccatcctggacttcccggg
caaccgggtgttgtggggtttcctggaccacctggacctccaggctatgcatctgggatt
tatgtgccaggcccacctggtcccactggctatccaggcgagaaaggggaccctggggag
cctggcgggatttatcatggactcccaggtcctgatggggatgttggtgatcctgggccc
cttggggatccgggcccacctggacctcctgaagacagaaccaacaggattaccaagggt
ctcccaggaatgaagggagtgaggggtatacctggacctatgggatatgatggggtgttt
ggaatgaaaggagtgaagggggagccctgttacaattgtcctgcaggatcaggaccacca
ggtccccgtggtccacctggcgcccatggctacaccccaggaccaggtgctaaaggcgat
ccaggttacccaggaccaagaggaattcctggaagaccaggtcctactggtgtagcagga
tttccaggccctcctgggcaaaagggagagtcatcttcctatgacatccctggaataaag
ggagaaaaaggacatccaggacatcctggcaggcctggcgcaggtggccgccctggcatt
cctggactaccaggtcgcaaaggcagtcaaggatatccaggggattcgtaccccatcacc
ggtccagagggagatcgtggtttcccgggtccaacaggactgcaaggcagaccaggacca
gatggctaccctggtccaccgggatatggccctgttggatttccaggaattaagggagat
gatggggtgcctggcctgccaggactgcctggaactccaggccaaaaaggggaatctggc
cactaccatgccaaaggacttcctggtccacctggttttaaaggtcgctctggctcacct
ggaggccgaggttataacggagttccaggtgccccaggaacaccaggttcgccaggccag
aaaggagagagaggtgacgtgacatttcctggaaggcctggtcctgagggacagaaaggt
gacaaagggcagccaggtctaccaggccaaccaggatggggcttggctggtcgactaggt
ccaccaggcattcctggtcctccaggacttaagggtgatggtggccctggatacactgga
cctgcaggcctcccggggcgtccaggagcagatggagatcagggacctgtaggagatcct
ggaagccctggcccacctgggttcccaggaataattggcattcctggggttccaggagaa
aaaggaaataaaggtcttcaaggcctcccaggaccatttgctgataaagattcatgtaaa
ggtttatctggaccagcaggaccacctggaccagatggttctccaggacatccaggagct
agtggcttgactggtgagaagggggatgcaggtttgccagggtttggtcgtcctggtccc
cctggtgaacctggtctaattgggctatcagtgccaggttcaagtgggcccccaggacat
aaagggatcaagggacaaggcggccgtcctggtcaaccaggactgagaggagaccctgga
ccagatgggacatcagggtatggaccagaaggattgcctggagttctgggaccgccgggc
caaataggtgcccgaggcccagatggagccagaggtctaccaggtccaccaggcatgcat
ggggagccaggttacagaggtcctccaggccctgcatcaccaataagtataatatctggg
cccccaggggatcctggtgatcaaggtcagcctggtcttcccggaccacaaggagatacc
ggaagtattggagcaaaagggcatagagggagagacggagcaccagggcctgttggacaa
aggggtgccccaggtaatccaggtcttgatggaacagtgcacttaccaggaaatcaagga
ccccctggtgcctcaggagacacaggattcaaagggcttccaggcccaaagggaataaaa
ggagaacaaggagtccctggaggcactggtccagatggtgcacctggttcacctggttac
aaaggagccaaaggagacccaggcaactgtggatatggagtgccgggaccaataggacaa
aagggtgaaccaggattgatcaatactgatgtgatgaagggtcagaaaggagaacctggt
gttactggacctggaggtataccagggtaccatggagccaaaggaaacccaggacctgtt
ggacacgatggtccatcgggttatcaaggacctaaaggttcagatggacctccaggagcg
aaaggacacagaggaccttacggaccagcaggtcaccctggtccatcaggaataggtggt
gttccaggtcctaaaggccaccagggccgggatgggttccctggaccaccagggcaaaaa
ggagatactatcgtgataggagggactcctggcccacatggtgatccaggtcaaccaggt
cctgctggaagccccggtccacctggcttgtctgctacagggtatcctggaccgacagga
gacagaggattaccaggtccacctgggctttctggtccaagaggatcaccaggaagagaa
ggagcttgtctgcctgggtcaaaaggagatctgggttatcctggaagtccaggttcacga
ggctatcctggctcacctggtcctcctggtcccacagtgccagggttaaaaggagaacca
ggagaccttggtccaataggaagcccaggctatagtggacccccaggagatctgggccct
caaggaccacctggtgtaagaggcagacctggaggacagggaccaagaggtgatcctggt
cctcctggacaccaagggcctctgggttacaagggagaccctggatacagcccaggccca
cctggaccgcctgggatgaaaggttttcctggacgacctggcctcaaaggtgaaccagga
attggcagatggatgtataaaccaggaccatccggcttacctggtcccaatggcaatcga
ggacctccagggatagcaggaccaccaggaccaccaggccgttcaggccggccgggcatc
aaaggagcacctggtcggggcccagtcggcccaccggggtttactggccacaaaggagac
aaaggaagagcaggattaccaggtccacgtggcagacttggagatccaggcaacaagggt
ccttcagggttaccgggcagaggcagcccgggttttgttgacactttcctgatagctaga
cacagtcagagcatccgtgtccctgactgccctactggcactagccttatgttctcaggc
tactccttcctcttcatcaacggaaatgagagagctcacggtcaggaccttggtaccatg
ggcagctgtctccctcgtttctccacaatgcccttcatgttctgcgacaccgagagcaac
tgccgctacgcttcacgtaacgactactcctactggttgtccactgacaagccaatgcct
gctaacatggtttcaatcacaggggatgggctggcctcgtacatcagcaggtgctcagtg
tgtgaaaccacctccaatgttattgccgtgcacagccagacaactcggattcctgaatgt
cctcgaggctgggagtccctgtggagtggatactcatttgtcatgcaaactggtgctggt
gcagacggctcctcccagccgctggtttctcctggctcttgtctggaaagcttccgtcaa
gtgcccttcatcgagtgtcacggcagggggacgtgcaactactaccctgattcctatagc
tactggctggcctcgctggaccctaaaagcatgttcagtaaaaccattcctcggacagtg
aaggggccgtccacgctcgatgtcatcagccgttgtcgagtctgcaggaagtcgtcatct
ggcggggatcagagacgtggggacaattaa
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