Acanthopagrus latus (yellowfin seabream): 119011156
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Entry
119011156 CDS
T08233
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03013
Nucleocytoplasmic transport
alat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119011156
03015 mRNA surveillance pathway
119011156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119011156
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119011156
5.6.2.5 RNA 5'-3' helicase
119011156
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119011156
mRNA cycle factors
Common to processing body (P body) and stress granule
119011156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
119011156
NCBI-ProteinID:
XP_036939960
LinkDB
All DBs
Position
21:10417238..10432211
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AA seq
1113 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
PDSVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSAYDRSSNGRSSNMYFQTHDQIGMIGTGPNPMTSMNL
PIPFNLVMPPIPPPGYMGQVNGPTSGRGGGMKGKAGSGGGGGSRGGRQRNRGNMGNHSGG
ADRGQHGGHMGGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGD
EFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagacactaacgttcctcgacaccgaggaa
accgagctgctgggagcggacacccagggctccgagtacgacttcaccgattttaccctg
ccgagccagacccagacccaaggccagacccagagtcagctagacaaccaggtgaatggt
cctgacagcgtgctacagaatggagatgaccccgtggtgaaagccagtcagctgctggca
gagctgaactttgaggaggatgaggaggacacctactacaccaaagatcttccaatacac
gcctgcagttattgtgggattcatgatccagcctgcgtggtctactgcaacaccagcaag
aagtggttctgtaatggccgtgggaacacatccggcagccacattgtaaaccacctggtg
agagcaaagtccaaggaggtgacccttcataaagatgggcctctgggggaaacagtgctc
gagtgctacaactgtggctgtcgcaatgtcttcctcctgggcttcatccctgccaaagct
gactcagtagtggtgttactgtgcaggcagccatgtgccagccagagcagcctgaaggac
attaactgggacagctcacagtggcagccgctcatccaggaccgctgcttcctgtcctgg
ctggtgaaaattccttcagagcaggagcagctcagggctcgtcagatcaccgcccagcag
atcaacaagctggaggaactctggaaggaaaatccaactgcgacattagaggatctggag
aagcccggcgtggatgaagagccccaacatgtgctgctccgctatgaggatgcttaccag
taccagaacatctttggtcctcttgtgaagctggaggctgactacgataagaaactcaaa
gagtcccagactcaagacaatattacagtcagatgggacttgggcctgaataaaaagagg
attgcttattttactctccccaagacagactcagatatgcgactgatgcagggagatgaa
atttgcttgagatacaaaggagacctggcacctccatggaaaggcattggacatgtcatc
aaagtccctgataactacggtgatgagattgccatagagctaaggagcagcgctggggct
ccggtggagatcccacacaactttcaggtcgactttgtgtggaagtctacttcctttgac
aggatgcaaagtgccctgaagacatttgctgtggatgagacttcagtgtcgggttacatc
taccacaaactgctgggacatgaggtcgaagatgtggtcatcaagtgccagctgcccaaa
cgcttcactgcccaaggcttgcctgaccttaaccactcacaggtgtatgctgtaaagact
gtgctgcagcgtcccctcagtctgatccagggtcctccaggcacaggcaagactgtcaca
tctgccaccattgtctaccacctggctagacagggcaatgggccagtgctggtgtgtgct
ccaagtaacattgctgttgaccagcttactgagaagatccaccagacagggctcaaggtg
gtgcgtctgtgcgccaagagcagggaggccattgattcacctgtgtccttcctggctctg
cacaaccagactcgaaacatggacagtatgccagaactgcagaagctccaacagctgaag
gacgagacaggagagctgtcttcctcggacgagaagcgctacagagctctgagacgcact
gctgagagggagctgcttatgaatgctgatgtaatctgctgcacctgtgttggggcgggg
gatcctcgtctggccaagatgcagttccgatccatcctgattgacgagagcactcaagcc
accgaaccagagtgcatggtgcctgttgtgctgggggccaaacagttgattctggtgggt
gatcactgccagctgggccctgtggtgatgtgtaagaaggcagccaaagcaggtctgtcc
cagtccctgtttgagcgtctggtagttttggggatccggccaatccgtctgcaggtccag
taccgtatgcatcccgctctcagcgccttcccgtccaacatcttctatgagggctctttg
cagaatggagtcactgccgcggaccgtgtgaagaaaggcttcgacttccagtggccacag
cccgacaagccaatgttcttttatgtcacccaaggccaagaggaaattgctagctctggg
acatcctatctcaacaggactgaggcagccaacgtggagaaaataaccacaaggttgttg
aaggctggagcaaaacccgatcagattggcatcatcacaccttacgagggacagaggtcc
tacctggtccagtacatgcaattcagtggctcccttcatacaaaactctaccaggaggtg
gaaatagccagtgtggatgcttttcaaggcagagagaaggacttcatcatcttgtcctgt
gtgagggccaacgagcaccagggcatcggcttcctcaatgatcccagacgtctcaatgtg
gcactcactagggccaggtatggtgtgatcattgtgggaaaccccaaggccctttccaag
cagcctctgtggaaccacctgttgaactactacaaggagcagaaggtcctggtcgaaggg
ccccttaacaacctgagggagagcctcatgcagttcagcaagccccgcaagctcgtcaac
accatcaaccctggaggtcgattcatgagcacagccatgtatgatgccagggaggctctc
atccctggatctgcttatgaccgcagcagcaacggacgttcatccaatatgtatttccag
acccacgaccagattggtatgattggaacaggccccaatcccatgacgtccatgaacctt
cccatccctttcaaccttgtcatgccccccatacctccacctggttacatgggacaggtc
aatggacccacatcaggtcgtggaggaggtatgaaaggcaaggcaggcagtggaggaggc
ggcgggagtcgcggaggccgtcaaagaaaccgtggcaacatgggaaaccacagcggagga
gcagaccgcgggcagcatggaggccacatgggtggcagccaggccagccaggacctgggc
tcccagcccttctcccaggggcctctgacgcagggctacatcaacatgagccagccgtca
cagatgagccagcctgggctctcccagcctgaactctcacaggacagttaccttggagac
gagttcaagtcccagattgatgtggctttgtcccaggactccacctaccagggggagcgg
gcctaccaacatggtggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
