Acanthopagrus latus (yellowfin seabream): 119012086
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Entry
119012086 CDS
T08233
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04140
Autophagy - animal
alat04148
Efferocytosis
alat05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
119012086 (vps18)
04148 Efferocytosis
119012086 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
119012086 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
alat04131
]
119012086 (vps18)
Membrane trafficking [BR:
alat04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
119012086 (vps18)
Hops complex
119012086 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
Apolipoprotein
zf-C3HC4_2
zf-RING_16
zf-RING_11
zf_RING_Vps8
zf-RING_2
zf-RING_Vps41
zf-RING_UBOX
zf-ANAPC11
DUF5600
DUF2175
zf-rbx1
DUF1664
zf-C3H2C3
DUF4446
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
119012086
NCBI-ProteinID:
XP_036941458
LinkDB
All DBs
Position
22:19983386..19988624
Genome browser
AA seq
982 aa
AA seq
DB search
MASILDEYEDSQNTRQSAQQHGRLSSANIGLTHSGFVNVRLEEEKPIFNKQRIDFTPPEK
INHLSVCSNQLCMSLGKDTLLRIDLAKPDQPNQVELGRKDESKVHRLFLDPTGSHLLISL
TTSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLGNETNTGPILVGTSQGIIFEAEISA
AEGSLFNTNPDQYFRQVHSLEEDGKPAPVCCLEVERGLENKYFIIATTRKRLFQFVGKVA
EGSEQQGFSSIFSQNQDLLPSFQEFPANMGYSEITFYTSKLRTSPKAFAWMMGNGVLYGQ
LDYVRPDSLLSDVQVWEYTPDIDLSANRPISIVLTQFHFLLLLRDRVKAICTLNGQVVYE
DVFPDKFGALKKMIKDPVGGLVWIYTERAVFRYHVQREARDVWQMYMSMNKFDLAKEYCR
DRPECMDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQEDALKEFLLKK
LNNLKQSERTQITLLVTWLAELYLNRLGQLESDGNSIIFQETRDDFRQFLSNSKHKECLF
NNRSTIYDLLASHGNVDDMVYFSVVMQDYERVISHYCQHDDYSAALEVLSKHCDQKLFYK
FSPVLMQHIPKNVVDAWIQMGKRLDPKKLIPALMNYSQMGSTQQINETIRYMEFCVYELT
VTEEAIHNYLLSLYAKYKPDRLLWYLEQAGTHASEIHYDLKYALRLCAEHGYLQACVLVY
RIMELYEEAVDLALQVDVDSAKACADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNCL
SSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIEELKQEMEEATESAKRIREDI
QEMRNKYGVVDSQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFQEVTPHLTAYKQNRLEE
LQKKLAATTQSSKSRHRASTKDEGDTASLGKGNAGTSREQIKSDIDDIIASECVYCGELM
IKSIDKPFIDPQKFEEEKSSWL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgatacttgacgagtacgaggactcgcaaaacaccaggcaaagtgcgcagcag
cacggccgcttgtcaagtgccaacatcgggctaacacattcaggttttgtgaatgtgaga
cttgaggaggagaagccgatattcaacaagcagcggatcgattttacaccgccggagaag
ataaaccacctttcagtctgcagcaatcagctctgcatgagtctgggaaaggacaccctg
ctgaggattgatttggccaagcctgatcagcctaatcaggttgaattaggaaggaaagat
gagagtaaagtgcacagactgttcctggaccccaccggatcccatctgctgatcagcctg
accaccagcgagtgtctgtatctcaacaggaacacgcagaaggtgcgcagtctgtcccgc
tggagaggccacctcatcgagagcgtgggctggaacaagctgctgggcaatgagaccaac
acagggcccatcctggttggcaccagccagggcatcatctttgaagcagagatctctgca
gctgagggcagcctgttcaacaccaatccagatcagtacttcagacaggtccactccctg
gaggaggatggcaagcctgcaccagtctgctgcctagaggttgagcggggcctggagaac
aaatactttatcatcgccaccacccgcaaacgcctgttccagtttgtgggtaaagtggcc
gaggggtctgagcagcaaggcttcagctctattttcagccagaaccaggacctgctgccc
agtttccaggagttcccagccaacatgggctacagcgagatcaccttctacacatcgaag
cttcgaacctccccgaaggcttttgcctggatgatgggtaatggagttctttatggtcag
cttgactacgtcaggcctgattccctgctgagtgatgttcaggtatgggagtacacccct
gacattgaccttagtgccaaccggcccatctccattgtgctgacacagttccacttcctg
ctgctgctccgtgaccgagttaaggctatctgcactctgaatggacaggtggtatatgag
gatgtgttcccagataaattcggtgccctcaaaaagatgatcaaggacccagttggcggg
ttggtgtggatttacactgagcgggcagttttccggtaccatgtccagcgagaggccaga
gatgtctggcagatgtacatgagcatgaataaatttgatttggccaaggagtactgccgt
gaccggccggagtgcatggacatggtgctggctaaagaggcagagcactgcttccagaac
aagcgatacctagagagtgccaagtgctatgcactgacgcagaactactttgaagaaata
gcactcaagttcatcgaagccaaacaagaggatgctctaaaggagtttctgctgaagaaa
ctaaataatctgaaacagagcgagagaacacagatcactctgctagtcacctggctagct
gagctctacttgaaccggctgggccagctggagagtgacggtaatagtatcatcttccag
gagacccgtgatgactttcgccaattcctcagcaactccaaacacaaggagtgcctgttc
aacaaccgcagcaccatctacgacctgcttgccagccacggcaatgttgacgacatggtt
tacttctcagtcgtcatgcaggactatgagagagtgatatcccactactgccagcatgac
gactacagcgcagctctggaggtgctctctaagcactgtgatcagaagcttttttacaag
ttctcccctgtcctcatgcagcacattcccaaaaacgtggtggatgcgtggattcagatg
ggcaagcggctggacccaaagaagctcatcccggctctgatgaactacagccagatgggc
agcacccagcaaatcaacgaaacgatccgctacatggagttctgtgtatatgagctgact
gtgaccgaggaggccatccataactacctgctgtcgctctatgccaagtacaagccggac
cgtctgctgtggtacctggagcaggcaggtacacacgcctcagagatccactatgacctg
aagtacgccctcaggctgtgtgcagaacacggctacctccaagcctgtgtcctggtttat
aggattatggagttgtatgaggaggcagtggatcttgctttacaagtcgacgtagactct
gccaaggcatgtgcagacctgcctgaggatgacgaggagctgaggaaaaagctttggctg
aagatcgcccgccatgtggtgcaggaggagaaagatgtgaagaaagccatgaactgtctg
tccagctgcaatctgctcaagatcgaagacatcctgccattcttcccagactttgtcacc
attgaccattttaaggaggccatctgcagctccctggaggaatacaaccagcacatcgag
gagctgaagcaggaaatggaggaggctacagaaagtgctaaacgcatcagagaggacatc
caggaaatgaggaacaaatacggagtagtggattctcaggaaaaatgtgctgcttgtgac
tttccattactcaacaggcccttctatttgttcctgtgtggacacatgttccactatgac
tgcctgttccaggaagtcacccctcatctcacagcatataagcagaatcgtctggaggag
ctgcagaaaaagctggctgcaaccacgcagtcctccaagtcacgccaccgcgcgtcaacc
aaggacgaaggagacactgccagcctgggaaagggcaatgcgggcacaagccgcgagcag
ataaaatcggacattgatgacatcattgcatctgaatgcgtgtactgcggcgaactgatg
atcaagtccattgacaagcctttcattgatccacagaaatttgaggaggagaaatccagc
tggctatga
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