Acanthopagrus latus (yellowfin seabream): 119012142
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Entry
119012142 CDS
T08233
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119012142 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alat03041
]
119012142 (cdc40)
Spliceosome [BR:
alat03041
]
Complex C
Other components
Step II factors
119012142 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
PQQ_2
Motif
Other DBs
NCBI-GeneID:
119012142
NCBI-ProteinID:
XP_036941563
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All DBs
Position
22:complement(15773598..15792560)
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AA seq
581 aa
AA seq
DB search
MSAAISSLVSYGSDSDSENEPESNTGVTKVEPVDPDAMAHLKPLKSVPTMSLAVLNSAPE
VAVKESVETGTHLDPALKEVSFNPTYETMFAPEFGPVNPFKSQQMAAPRNMLSGYAEPAH
LNDFMFEQQRRTFSTYGYALDPSVDTHQVSASGYIGAVDEAEKNKGLTVFESGHKKSEKR
KKIKGGDAEEIDNFLGPWAKYIDEKDVAKPSEDEQKELDEITAKRQKKGRNEEEAPGEEK
TILHVKDMYDYQGRSYLHVPQDVGINLRSAEAPDKCYLPKKQIHVWSGHTKGVSAIRLFP
SSGHLLLSSSMDCKIKLWEVYGERRCIRTFIGHSKAVRDICYNNTGTQFLSAAYDRYLKL
WDSETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRTGEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKVFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgccatatcttccctcgtttcgtacggcagcgattctgattcagaaaatgag
ccggaatccaataccggtgtcacaaaagtggaaccggtggacccggacgcaatggctcac
cttaaacctctgaagtctgtaccaacgatgtctttagctgttcttaactctgctcctgag
gtcgccgtaaaggagtccgttgagactggcactcacctggaccctgcactgaaagaagtc
tcattcaatccgacatatgaaaccatgtttgcaccagagtttgggccagtgaacccattt
aaaagccagcagatggctgcccccaggaacatgctctcgggctatgcagaaccagctcat
ctcaacgacttcatgtttgaacagcaaaggagaaccttctccacctacggttacgcttta
gacccatctgtggacacacaccaggtatctgccagtggttacatcggtgcagtggatgag
gctgagaaaaataaagggctaactgtgtttgagagcggacataagaagtcagagaaaagg
aaaaagatcaaaggtggagatgcagaggagatcgacaacttccttggaccttgggcgaaa
tatatcgatgagaaagatgttgccaagccgtccgaggacgagcagaaagagctggatgag
atcacagccaagaggcagaagaagggaaggaatgaggaagaggctccaggagaggagaag
accattctccatgttaaagacatgtatgactaccagggcaggtcctacctccacgtccca
caagatgttggcatcaacctgcgttctgcagaggctccggacaagtgttacctgcctaag
aaacaaattcatgtctggagtggacacaccaagggtgtcagtgccatccgactgtttccc
agctctggtcatctcttgctctcctcctccatggactgtaagatcaagctgtgggaagtg
tacggcgagaggagatgtatacggacgtttattggtcacagcaaagcagtgcgagacatt
tgctacaataacactgggacccagttcctcagcgctgcctacgaccgctatctcaaactc
tgggactctgagacaggacaatgcatttcccgcttcaccaacaggaaggtgccatactgc
gtcaagttcaacccagacgaggacaagcagaacctctttgtggccggaatgtcagataag
aagattgttcagtgggacatcaggacaggtgaggtggttcaggagtacgaccgtcacctg
ggagctgtcaacaccatcacgtttgttgacgagaatcgtcggtttgtcagcacatcggac
gacaagagtcttcgagtgtgggagtgggacatccccgtggacttcaaatacatcgccgag
cccagtatgcactccatgccagctgtgacactctctcccaacggtaaatggctagcatgt
cagtctatggataaccagattctgatctttggcgcccaaaaccgcttcagactgaacaag
aagaaagtcttcaaaggccacatggtggctggctatgcctgccaagtggatttctcccca
gacatgagctatgtggtgtcaggagacgccgacggaaagctgaacatctgggactggaag
accaccaagctgtaccacaggatcaaggctcatgacaaggtgtgcatcagcgccctgtgg
catccacatgaaacctccaaggtcatcacctgcggctgggacggacaaatcaaactctgg
gactag
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