Acanthopagrus latus (yellowfin seabream): 119012154
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Entry
119012154 CDS
T08233
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat00100
Steroid biosynthesis
alat01100
Metabolic pathways
Module
alat_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
119012154 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
alat01006
]
119012154 (fdft1)
Enzymes [BR:
alat01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
119012154 (fdft1)
Prenyltransferases [BR:
alat01006
]
Terpene biosynthesis
Squalene/phytoene synthase
119012154 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
HAUS4
GBP_C
Motif
Other DBs
NCBI-GeneID:
119012154
NCBI-ProteinID:
XP_036941588
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All DBs
Position
22:complement(16695719..16704934)
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AA seq
457 aa
AA seq
DB search
MAGACCKCPLSLSVLKRSLSVAPRGCGSAPRSLPLGWRLGERGLQEAARPSSALRPAASY
RHTAFLCLSCQESMSESLRTCYLYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTV
EDDMTIPLDKKVPMLNDFHTYLYQDEWCFTESQEKDRQVLEDFPTISLEFRNLAQEYRDV
ISDICHRMGVGMAEFLEKKVGSMKEWDLYCHYVAGLVGVGLSQLFSASKLEDPEVGRDTE
LANSMGLFLQKTNIIRDYLEDTQQGRAFWPQEAWSQFAGRLEDLAHPEKLESALSCLNLL
VTDALRHVPDVIAYLSRLHNQSVFNFCAIPQVMAIATLSSCYNNPMVFQGVVKIRKGQAV
TLMMEATNMGAVQTIIAQYSQEIVQKVSLTDPSRDKTLHILAVIRDKSALSQSSLPTRTH
HLSPMYLSAAMLLAALSWQYLSTTAAQAQGTGDMHGQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcttgctgcaagtgtccgctctctctgtccgttctcaagcgctctctctcg
gtggcgccgcgcggctgcggctccgctcctcggtccctccctctgggctggaggctcggg
gagcggggcctgcaggaggccgcccgaccctccagcgccctcagacccgcagcgtcttac
cgacacacggccttcctctgtctctcctgccaggagtccatgagcgagagtctgcggacc
tgctacctgtacctgaaccagaccagccggagcttcgccgccgtgattcaggcgctggac
ggagagctgaggcatgcagtttgtattttctacctggtgctgcgagcgctggatacggtg
gaggacgatatgaccatccctctggacaagaaggtccccatgctgaacgatttccacacc
tacctgtaccaggacgagtggtgcttcactgagagccaggagaaggaccgacaggttctg
gaggatttccccacgatatcactggaattcagaaacctcgctcaggagtacagagacgtc
atctcggacatctgccaccgtatgggagtggggatggccgaattcctggaaaagaaagtg
ggatccatgaaggagtgggacctgtattgccattacgttgccgggctggtcggtgtcggt
ctgtctcagctgttctctgcgtctaagctggaggaccccgaggtgggccgggacaccgag
ctcgccaactccatgggcctgttcctccagaagacgaacatcatcagagactatctggag
gacacgcagcagggacgtgctttctggccacaagaggcttggagtcagtttgcgggtcgt
ctcgaggacttggcccatcccgagaagctggagtctgcgctctcctgtctcaacctgctg
gtcactgatgctctgcggcacgtccccgatgttatcgcctacctgtcccgcctgcacaac
cagagcgtgttcaatttctgcgccattcctcaggtgatggcaatagctacactctcgtca
tgctacaacaaccccatggtgttccagggagtcgtgaagatcagaaagggacaggctgtc
acgctcatgatggaagccaccaacatgggcgcggtgcagaccatcatcgcccagtacagc
caggagattgtacagaaggtctccctcaccgacccgtcacgggacaagaccctgcacatc
ctggctgtcatcagggacaagtcggctctgtcgcagtccagcctccccaccaggacccac
cacctgtcgcccatgtacctgtctgctgccatgctgctcgccgccctcagctggcagtac
ctcagcaccactgcagcgcaggcgcagggcaccggagacatgcacggacagtga
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