Acanthopagrus latus (yellowfin seabream): 119013317
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Entry
119013317 CDS
T08233
Symbol
casc3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03013
Nucleocytoplasmic transport
alat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119013317 (casc3)
03015 mRNA surveillance pathway
119013317 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119013317 (casc3)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119013317 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
119013317
NCBI-ProteinID:
XP_036943625
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All DBs
Position
23:complement(24928761..24942134)
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AA seq
784 aa
AA seq
DB search
MNTSVDIVLCSVNHFQHNESGKFIIILFFSSLVKPRRKGASWNAFTRATDSATTPAGLPL
GFCGLWWFLLKESEDGVGEAVLSDYDSADPEENGSHSEGVEEEEEAAEHFSDEEAPVAAS
KATPSAVDSPAKVDEEEGEDKEQEVEVEGGGGGQREEESKAEEKGNLAGERQSGDGQEST
DDPETKAGGKPGQKLDDDEDRKNPAYIPRKGLFFEHDVRGHAQEEERPKGRNRKLWKDEG
RWEHDKFREEEQAPKSREELIAIYGYDIRNGGGSGDRSYRQRRPRQNTSPSRDKRWRDGG
ERPVRSWQSGGGLNRGGAPAPSSTHPSSISPSSAQRSSNPSRPPPSRSRPSHQNQMHLPP
QNQFRNNESNPPQVHPRERQSPKAPPEPTDKDRGVVGRGGRGGGGRGGPSVVIEDISVSQ
GGVGEQDQSAVTTAASSQPGGYKSASPRRQQQEQRGSADRSVSGLAVSSSTSEPALQSLA
AATNREASPPTERPVERKSYSLARRTRSRPADLGSKQASVEESATVGNASSPNIVGGKSW
AGAGDGPSPGGGGGGGGALTELDQDVARLSLAGQSWSQSPASYIRSEMRGISSPMHLPAG
PPQFSSIEEMGVGSNRAKRYSSQRQRAVPEPAPPMHLGVMEGHYYEPMSYQGPIYAHGEG
PAPIPPQGMLVQPEMHIPHPGLHPHQSGGPIANPALYGGPPVSLSPGQPQQLLPPPFYPP
PGVMTFPYPAMYPSPQGQAQVTYGGVTYYDTMQQQAQPKPSPPRRTSQPVTIKPPPPELH
FASE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaacacttctgtggatattgtgttatgctcagtcaaccatttccaacacaacgagtcc
gggaagtttattataatcttatttttctcctctttggtgaaaccgagacgaaaaggcgcc
agttggaacgcatttacacgggcaacagattctgccacaacaccggccgggctccccctc
ggcttctgtgggttatggtggtttttactaaaggagagtgaagatggagtaggagaagcc
gtcctctctgactacgacagtgcagatccagaggaaaatggctcccactcagagggtgtg
gaggaggaggaggaggcggcagagcatttcagcgatgaagaagctccagtagcagctagc
aaggccacaccctctgcagtcgacagcccagcaaaggtagacgaggaggagggcgaggat
aaggaacaggaggtggaggtggagggaggaggaggaggacagagggaagaggagagcaag
gctgaagaaaaaggaaacctagcaggagagagacagagcggagatggacaggagtccact
gatgaccctgaaacgaaggccggagggaaacctggtcagaagcttgacgatgacgaagac
agaaagaacccggcctacatcccaaggaagggtctgttcttcgagcatgacgtcagagga
cacgctcaggaggaggagagacctaaaggcaggaacaggaagttgtggaaggacgagggt
cgctgggagcacgacaagttcagggaggaagagcaggcgcccaagagtcgcgaggagctc
atcgccatctacggctacgacatccgaaatggtggcggctctggggaccgatcgtaccgg
cagcgcaggccgagacaaaacacgtctcccagccgagacaaacgatggagagatggagga
gagagaccggtacggtcctggcagagtggaggaggtctgaaccgaggaggagctcctgca
ccctcatccacccacccctcctctatatccccctcctctgctcagaggagcagcaatccc
tccaggccacctccttcccgcagcagaccgtcccaccagaaccagatgcacctcccgcct
cagaaccagttccggaataatgaatcaaacccaccccaggtgcatccaagagaacgacag
agtcctaaagctccacctgagcccactgacaaagacagaggtgtagttggcaggggaggg
cgtggtggtggggggaggggagggccctccgtggtcattgaggacatctccgtcagccag
ggtggtgttggggaacaggaccagagtgctgtaacaacggcggcatcttcacagccgggt
ggttacaagtctgcatcaccgaggcgacagcagcaggaacaacgagggagtgctgacaga
tccgtgtcaggattggctgtttcgtcctccacatctgaacccgccctgcaatcattagct
gcagcgaccaatcgagaagcctctcctccaactgagcgtccggtggagcgtaaatcttat
tcactggctcgcaggactcgctctcggcccgccgacctgggcagcaaacaggcgtccgtg
gaggagtctgcaacggtaggaaacgcctcctcccccaacatcgtgggagggaagagctgg
gcaggagccggcgacgggccgagtccagggggagggggagggggaggaggagctctgacc
gagctggaccaggacgtcgctcgactcagtctggcaggacagagctggagccagagcccg
gcatcctacatccggtctgagatgagaggcatctccagcccaatgcacctgcctgccggc
ccgcctcagttctccagcatagaggagatgggtgtcggttccaaccgggccaaacgctac
tcctcccaacggcagagggccgtacctgagccggcaccgcccatgcaccttggagtgatg
gagggacactactacgagcccatgtcatatcagggaccaatctatgcccacggggaaggc
cccgcccccatcccacctcaaggcatgctggtccagccggagatgcacatcccccacccc
ggtcttcatccccaccagtcaggtggcccgatcgctaaccccgccctctatggaggccca
cctgtttctctgtcaccggggcaaccacagcagctgctgccaccacctttctaccctcca
cctggagtcatgacgttcccttaccccgccatgtacccgagtccacagggtcaggcccag
gtgacttacggaggtgtgacgtactacgacacgatgcagcagcaggctcagcccaagcct
tcgcccccccgtcgcacatcacagcccgtcaccatcaagcccccccctccggagttgcac
ttcgcctcagagtga
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