Acanthopagrus latus (yellowfin seabream): 119013456
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Entry
119013456 CDS
T08233
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119013456 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alat03041
]
119013456 (ddx42)
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119013456 (ddx42)
Spliceosome [BR:
alat03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
119013456 (ddx42)
Complex B
119013456 (ddx42)
Complex C
U2 SnRNP specific factors
119013456 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
CARF-assoc_HTH
Motif
Other DBs
NCBI-GeneID:
119013456
NCBI-ProteinID:
XP_036943895
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All DBs
Position
23:complement(15862765..15870092)
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AA seq
911 aa
AA seq
DB search
MSMNWNKGGPGVKRGFGFGGFSLAGKKEEPPLPNKSHTSFGPTGSAGGYGKNQQLPSFYK
IGTKRANFDEENAYFEDDEEESSSNVDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMA
EVESQAAKDMRKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEDENI
DYDSDGNPIAPTTKKIILPLPPIDHSEIDYPPFEKNFYNEHEELSSLTGTQVLELRHKLN
LRVSGAAPPKPCTSFAHFSFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTG
SGKTAAFIWPMLVHIMDQKELEEGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQMVELLQS
GSDKWNWLTRRLVEFTSTGSVLIFVTKKANCEELATNLNQEGYSLGLLHGDMDQSERNKV
ISDFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGMAYT
LLTSKDTTFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKSGKGKKLNIGGGGLGY
RERPGLGAESSERSSSSLLSSTSSFEGYSKPATGALGDRMSAMKQAFQAQYKSHFVAASS
GPPKLTTKSNSSSGWTSAGSLSSVPTEAPNGSERSQGITMSMCGFTSAGSLSSVPASQTS
PQLSSFPPPAPPSPRDSSRDRHGEDRGRHGDSHHRHSDRSDRHSGDDRYGDRDRHGDRDR
DRHGDRDRYSSSSSSSRHSDSRNGDGSRRDREDRRSERDGGDRGSGEGRDRGDDSFAVPE
PPKRRKSRWDN
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgaactggaacaaaggcggtccgggggtgaagcgggggtttgggtttggagga
ttttctctcgcagggaaaaaagaggaacctcctctccccaataaatctcacacatcattt
ggaccaacaggatcagctggggggtatgggaagaaccagcagctcccctcattctacaaa
atagggacaaaacgagctaattttgatgaggaaaacgcgtactttgaagatgatgaagag
gagtccagcagcaatgttgatttgccatacatcccagctgagaactctcccacacggcag
cagatgcagtctggtggtggctcagacagtgaagatgacccactggatgccttcatggcc
gaggttgagagccaagcagctaaagacatgaggaaactagaggaaaaggaaaaggagaaa
aagtcagcaaagggtattcgtgatgacattgaagaagaggatgaacaagaagcctacttc
cgctacatggcagagaatcccacagccgggctgacccaagaggaagaagacgaaaacatt
gactatgacagtgatgggaacccaattgcccctaccactaagaaaatcatcttgccgctt
cctccaattgaccactctgagattgattaccctccctttgagaaaaacttctacaatgag
cacgaggagctgagcagcctcactggaacccaagtgttggaattaagacataaactgaac
ttaagggtatctggtgctgcacctccaaaaccttgtactagtttcgcacacttctccttt
gatgagcagttgatgcatcaaatccgcaagtccgagtacactcagcccacaccaattcag
tgccagggtgttcccatagctctttcaggacgtgatatgattggcattgcaaaaactggc
agtggcaaaactgctgcttttatctggcccatgctggttcacatcatggatcaaaaggag
ctggaggaaggagagggcccaattgcagtcattgtgtgtcccaccagagagctttgtcag
cagatccatgcagaatgtaagcgttttggtaaagcctactcattgcgttctgtggcggtg
tatggaggaggcagcatgtgggagcaggccaaagctctgcaagagggagcagagattgtg
gtgtgcactccgggtcgtctgattgatcacgttaaaaagaaggccacatccctgcaaaga
gtgacatacctggtctttgatgaggcagatcgcatgtttgatatgggctttgaataccag
gttagatctattgctagccatgttcgcccagacagacaaacccttttgtttagcgctact
ttccgaaagaagattgagaggctggccagagacatcttagtagatcctattcgtgttgtg
cagggagacattggagaggccaatgaggatgtgacccagatggtggagttgctgcagagc
ggctcagataaatggaactggctgacccggcggcttgtcgagtttacctctactggctca
gtcctcatcttcgtcaccaagaaggcaaactgtgaggaactggctactaacctgaaccag
gagggctacagcctgggcctcctgcacggagacatggaccagagtgagaggaacaaggtc
atcagcgactttaagaaaaagaatttgcctgttctggtggcaactgacgttgcggctcgt
ggtctggacatcccgtccattcgcacagtggtgaactacgacgtggcacgagacatcgac
acgcacacacacaggatcggccgaactggtcgtgctggagagaagggtatggcttacact
ctcctcaccagcaaagacaccacttttgccggtgaccttgttagaaatctggagggagcg
aatcagtctgtttccaaagaactgatggacttagcgatgcagaatccctggttcaggaaa
tcccgattcaagagtggtaaaggaaagaagctgaatattggtggaggtggtcttggttac
agagaaagaccaggccttggggctgagagttctgaacgcagcagcagcagcttgttgtct
tccactagtagcttcgaaggctacagcaaaccagccacaggggcacttggagatcgcatg
tccgcaatgaaacaagccttccaggctcagtataaaagccactttgtagctgcatccagc
ggccctccaaagctcaccaccaagtctaacagctcgtcaggctggaccagtgctggcagc
ctgagctctgtgccaacggaggcccccaatggttcagagcggtcccagggcatcaccatg
tccatgtgtggcttcaccagcgctggctccctgagctcagtgcccgccagtcagaccagt
ccacagctcagcagcttccctccgcctgctcctccctcaccaagagacagttcacgggac
agacacggggaggaccgggggcgccatggagacagtcaccaccgccacagcgacaggagc
gatcgtcacagcggagatgatcgctacggagaccgggatcgccatggagacagagatcgg
gaccgccacggggaccgagatcgctacagcagcagcagcagcagcagccgccacagcgat
agtcgcaatggagatggaagcaggagggacagagaagataggaggagtgaaagggatggg
ggagacagggggagcggggaggggagggacagaggagatgatagttttgcggttcctgag
ccaccaaaacgtagaaagagcaggtgggacaactaa
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