Acanthopagrus latus (yellowfin seabream): 119013736
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Entry
119013736 CDS
T08233
Symbol
smarca4a
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119013736 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alat03021
]
119013736 (smarca4a)
03036 Chromosome and associated proteins [BR:
alat03036
]
119013736 (smarca4a)
Transcription machinery [BR:
alat03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119013736 (smarca4a)
Chromosome and associated proteins [BR:
alat03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
119013736 (smarca4a)
Chromatin remodeling factors
BAF complex
119013736 (smarca4a)
PBAF complex
119013736 (smarca4a)
GBAF(ncBAF) complex
119013736 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
BRK
Bromodomain
HSA
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
119013736
NCBI-ProteinID:
XP_036944462
LinkDB
All DBs
Position
23:5300660..5315810
Genome browser
AA seq
1647 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGGMMGPSPGPSPGSAHSMMGPSPGPPGSGHPHPPQG
PSGYPQDNMHQMHKPMEAMHEKGMPDDPRYSQMKGMGMRPGGHAGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGPMMPGGPSGPVAGPMEGSGDPNQAMGQPNRGGPQGPGG
PPGAAGGPGGAGGPTPFNQNQLHQLRAQIMAYKMLARSQPLPEHLQMAVQGKRPMPGMQP
QPMPNMPPTTGPGGGPGAVPGPAQANYNRPHGMVGPNMAPPGPAGVPPGMQGQPTNGPPK
SWPEGPMVNAAAPSNPPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPALPPSM
MLHQKQNRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIE
LKALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIE
QERKRRQKHQEYLNSILQHAKDFKEYHRSITAKIQKATKAVATYHANTEREQKKENERIE
KERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKEKKKK
KKKKKPETVEGGSAALGPDGEPLDETSQMSDLPVKVIHTDSGKILTGMEAPKAGQLEAWL
EMNPGYEVAPRSDSEDSGSDEEEEEEEVQITEEEEEQPQPSSAPTEKKIPDPDSEEVSEV
DVRHIIEHAKQDVDDEYGNASFNRGLQSYYAVAHAVTEKVDKQSTLLVNGQLKQYQIKGL
EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEYKRLNGPFLIIVPLSTLSNWVYEF
DKWAPSVVKVSYKGSPAARRAFVPILRSGKFNVLLTTYEYIIKDKQVLAKLRWKYMIVDE
GHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA
LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH
LGYSGGIVSGPDLYRSSGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRSFK
YLRLDGTTKAEDRGMLLKTFNDPASEYFVFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ
DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSGCE
RRAFLQAILEHEEQDEVGARGGCRTRGAWEEDEVPDDETVNQMIARSEEEFEQFMRMDLD
RRREEARNPKRKPRLMEEDDMPSWILKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDS
LTEKQWLKAIEEGNLEDIEEEVRHKKTTRKRKRDRDHDGGPATPSSSSGRGREKDEEVKK
AKKRGRPPAEKLSPNPMSLTKKMKKIVDAVIKYKDGSNGRQLSEVFIQLPSRKELPEYYE
LIRKPVDFRKIKERIRSHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTS
VRQKIEKEDESEGEESEEEEEEPDEGSESESRSVKVKIKLSRKEKGDRGGKGQRRRGRGA
RAKPVVSDDDSEEEQEEERSASGSEED
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccctgaccccccaatgggagggactcctcggcccggaccctccccgggccca
gggccttctccaggaggcatgatgggtccgagcccgggtccctctcctggctcagcccac
agcatgatggggcccagcccaggacctcctggatctggacaccctcaccctccacaggga
ccctcaggatatcctcaggacaacatgcaccagatgcacaaacccatggaagccatgcac
gagaagggaatgccagatgatccccgctatagccagatgaagggcatgggcatgagacca
ggggggcatgctgggatgggaccccctccaagcccaatggaccaacattcccaaggttac
ccctctccattgggaggctcagagcacgctcctagccccgtcccagctaatggccctccc
tctggccctatgatgcccggaggtccctctggccctgtggctggcccgatggagggcagt
ggggaccctaaccaggcaatgggtcaacctaaccgtggtggcccccagggtccaggtggg
cccccgggtgcggcaggtggaccaggtggtgcaggcggaccaactcctttcaaccagaac
cagctacaccaactcagggctcagattatggcctacaagatgctggcccgcagtcagcct
ctaccagagcacctgcagatggctgtgcaggggaagagacccatgccaggcatgcagcca
cagcccatgcccaacatgccacctactacaggacctggaggagggcctggggctgttcca
ggaccagctcaggccaactacaacagaccacatggtatggtaggtcccaatatggcaccc
cctggacctgcaggagttccccctggtatgcaaggccagcccaccaacggaccccctaaa
tcatggcctgaaggaccaatggtgaatgctgctgccccatccaaccctcctcagaagctc
attccacctcaacccactggcagaccctctcctgctcctccctctgtgccccccgctgcc
tccccagtaatgccccctcagacacagtccccaggacagccggccttgcccccttccatg
atgcttcaccagaagcagaaccgcataacccctatccaaaaacctcgcgggctggaccca
gtggagatcctccaggagagagagtacaggctacaagctcgtattgctcatcgtatccag
gagctggagaatcttcctggttctctggctggtgacctgcgcaccaaagccaccattgag
ctcaaggccctgaggctgctgaacttccagagacagctgcgtcaggaggtggtggtttgc
atgcgtcgtgacactgctttggaaactgccctcaacgctaaggcctacaaacgaagcaaa
cgtcagtcactgcgtgaggcccgcatcactgagaagcttgagaaacaacagaagatcgaa
caggagcgtaaacgtcgtcagaaacaccaggaatacctcaacagcatcctgcagcacgcc
aaggactttaaggagtaccaccgctccatcacagcgaagatccagaaggccaccaaagcc
gtcgccacgtatcatgccaacaccgagcgcgagcagaagaaagagaatgagcgcattgaa
aaggagagaatgcggaggctgatggctgaagatgaagaaggatatcgtaaactcattgac
caaaagaaagacaagcgcctggcctacctgctgcagcagacagatgagtacgtggccaac
ctcaccgagctggtgcgagcccacaaagctgtacaagctctcaaagagaagaaaaagaag
aagaaaaagaagaagcctgagactgtggagggtggttctgctgctctgggacctgatgga
gagcctttagatgagaccagtcaaatgagtgacctgccggtgaaggtcattcatacagac
agtggaaagatcctgactgggatggaggcacctaaagctggacagctggaggcatggctg
gaaatgaacccaggatatgaagtagcgccacgttcagacagtgaagacagtggctcagac
gaggaggaggaggaagaggaggtacagatcacagaggaggaagaggagcagcctcagccc
tcatcagctccgactgagaagaagatccctgaccctgacagtgaagaagtatctgaagtg
gacgtccggcacatcatcgaacacgccaagcaggatgttgacgatgagtacggtaacgca
agtttcaacagaggcctgcagtcatactatgccgtggctcacgccgtcactgagaaagtt
gacaaacaatccacactgctggtgaatgggcagctcaagcaataccagatcaaaggtttg
gagtggctggtgtcgctttacaacaacaacttgaatggcatcctggctgacgagatgggt
ctggggaaaacgattcagaccatcgccctcatcacttacctcatggagtacaagcgcctc
aacgggcccttcctcatcattgtaccactctcaactctatcaaactgggtctatgagttt
gataagtgggcgccatctgttgtgaaagtctcctacaaggggtctccagctgctcgccgt
gcatttgttcccatcttgcgcagcggcaagttcaacgtgctgctcaccacatacgagtac
atcattaaagataagcaagtgctggcaaagcttcgttggaagtacatgattgtggacgag
ggccatcgaatgaagaaccaccactgtaagctgacccaagtcttgaacacgcactacttg
gctccaaggcgtgtgctgcttacaggcactccgctgcagaacaagctgccggagctctgg
gccctcctcaacttcctgctgcccaccatcttcaagagctgcagcacatttgaacagtgg
tttaatgcccctttcgccatgactggggagaaggttgacctgaatgaagaagagaccatt
ctgatcattcgccgtttacacaaagtgctcaggcctttcttgctgcgccgactcaagaaa
gaagtcgaggcccagctgcctgagaaggtggagtacgtgatcaagtgcgacatgtcagcc
ctacagagggttttgtacagacacatgcaggcgaagggagtcttgctcacagatgggtca
gaaaaagacaagaagggtaaaggcggcacgaagaccctgatgaacactattatgcaactg
agaaagatttgcaaccacccctacatgttccaacacattgaggagtctttctctgagcat
cttggttattctggtggaatcgtgagcggtcctgacctgtaccgctcctctgggaagttt
gagctgctggatcgtatcctgcccaagctgagggccaccaaccacaaagtgctgctcttc
tgtcaaatgacaacactcatgaccatcatggaggactactttgcctaccggagcttcaag
tacctgcgtctggatggcactaccaaggcagaggaccgtggcatgctgctgaagacattc
aatgacccggcctctgagtactttgtgttcctgctcagcaccagggcaggaggcctgggt
ctcaacctgcagtctgctgacactgtcatcatctttgacagtgactggaacccacatcag
gatctgcaggctcaggacagagcccatcgtatcggtcagcagaacgaggtgcgcgtgctc
cgcctctgcactgtcaacagtgtggaggagaagatcctggcagcagccaagtacaaactg
aacgtggaccagaaggtcatccaggctggcatgttcgaccagaagtcttcaggctgtgag
cgtcgagccttcttgcaggccattctggagcacgaggaacaggacgaggtcggggctcga
ggaggctgccgcactaggggggcgtgggaggaggatgaggtgcccgatgacgagactgtc
aatcaaatgattgccagaagtgaagaagagtttgaacagttcatgcgcatggatttagac
agacgccgcgaggaggcccgcaaccccaagaggaaacctcgtctgatggaggaggatgat
atgccaagctggattctgaaagacgacgctgaggttgagaggctaacttgtgaagaggag
gaggagaagatgtttggcagaggatcccgccaacgcaaggaagtggactacagtgactcc
ctcactgagaaacaatggctgaaggccatagaagagggaaatctagaggacattgaagag
gaagtgcgtcacaagaagaccaccaggaagcgcaagagagatcgcgaccacgatggcggc
ccggctacacccagctccagcagcggccgagggcgggagaaggacgaggaggtgaagaag
gcgaagaaacgcggtcgcccacctgctgagaagctctctcccaaccctatgtccctcacc
aagaagatgaagaagatcgttgatgccgtcatcaaatataaggacggcagtaatggccga
cagctcagtgaagtcttcattcagcttccttctcgcaaggagctgcccgagtactatgag
ctcattcgcaaaccagtggacttcagaaagatcaaggagaggatccgcagccataagtac
cgcagcctgaacgacctggagaaggatgtgatgctgctgtgtcaaaacgcccagactttc
aacctggagggctctctgatctatgaggactccatagtgctgcagtccgtcttcaccagt
gtgagacagaagatcgagaaggaggacgagagtgaaggggaggaaagcgaggaagaggag
gaggagccagatgaaggctcagagtctgaatctcgttcggtgaaggtgaagatcaagctg
agccggaaagaaaagggcgaccgaggagggaaaggacagcgacgaaggggccgcggagcc
cgggctaaacctgtggttagtgacgatgacagcgaggaggaacaggaagaggagcgctcg
gccagtggcagcgaggaggactga
DBGET
integrated database retrieval system
