Acanthopagrus latus (yellowfin seabream): 119013858
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Entry
119013858 CDS
T08233
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119013858 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119013858 (xab2)
03041 Spliceosome [BR:
alat03041
]
119013858 (xab2)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119013858 (xab2)
Spliceosome [BR:
alat03041
]
Complex B
Other components
Prp19-related factors
119013858 (xab2)
Complex C
119013858 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
NRDE-2
TPR_MalT
TPR_1
Tcf25
Motif
Other DBs
NCBI-GeneID:
119013858
NCBI-ProteinID:
XP_036944640
LinkDB
All DBs
Position
23:complement(20632594..20640684)
Genome browser
AA seq
850 aa
AA seq
DB search
MPSLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQSGQKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPGYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRVWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAIVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDEDDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNPRQIINTYTEAVQTVDPMKATGKPHSLWVAFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHSYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVESEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCQRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKLKEKILFVRSDTSRSELAELSKQANPDEIDIDDDDEDDDDEDQGPDEVQLEQKSVP
TAVFGGLKDD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaacggaaaacctgatgttatgtttgaggacgatgatctgccttatgag
gaggagatcatcaggaacccgtattcagtcaagtgctggatgcgttacatcgaattcaag
cagagcggacaaaaatctgtcctcaacatgatttatgagcgggctctgaaagagctgcct
ggcagctacaaactgtggtacaattatctaagagagaggcggaagcaagtcaaagggaaa
tgtatcactgaaccaggctatgaagaggtcaataattgccatgaaagggcactggtgttc
atgcataagatgcctagaatatggcttgattactgccagttccttgtgtctcagtgcaag
ataacaagaagtcgtcaaacatttgaccgtgcactcagagctcttccagttactcagcat
ccgcgggtctggcctctgtacctccgctttgtccgtaacctgcctctgcctgagacagcc
atccgggtgtaccgcaggtacctcaagctttctccagagaatgctgaggaatacattgac
tacttacggtctgttggccgcttggatgaagcagctgtgcgattagcagctattgtcaat
gatgaaaactttgtgtccaaagagggcaaatctaactatcaactgtggcatgagctatgc
gacctgatctctcagaaccctgataaggtgacctctctgaatgtaggagccatcatccga
ggaggcctcactcgcttcacagaccaacttggaaagctctggtgctcgttagctgactat
tacatcaggagtggccactttgaaaaggcccgtgatgtatatgaagaggccatccttaca
gttgtaacagtaagggatttcacacaagtgtttgatagctatgcccagtttgaagagagc
atgatcgcagcgaagatggagaccaccgctgagatggggcaggatgaagatgatgacatc
gacctggagcttagactggctcgctttgagcagctgatagcacggcgccccctcctgttg
aatagtgtgctgctgcggcagaatcctcacaatgtccatgagtggcacaagcgggtaaaa
ctgtatgacggcaatccacggcagatcatcaacacatacactgaggcagtacagactgtg
gatccaatgaaggcaacagggaagcctcactctctctgggttgcatttgctaaattctat
gaggaaaatgagcagctggatgatgccaggacaatttttgagaaggctaccaaggtgaac
tacaagcaggtggatgaccttgctgcagtgtggtgtgaatatggagagatggagctccgg
cacgagaactatgaacaggcactgcgcatactgaggaaagctacagccatcccatccaag
aaagcagagtactttgacgcatctgagccagtccaaaacagagtctacaaatccttgaag
gtctggtctatgctggcagacttggaggagagccttggcactttccagtctacaaaagca
gtgtatgaccgcattattgacctccgcatcgccacgccacagatcatcataaattatgcc
atgttccttgaagagcacagctactttgaggaaagcttcaaagcatatgagcgtggtatc
gctctcttcaggtggccaaacgtttatgacatctggaacacttacctcaccaaattcatt
gatcgttatgggggcaagaagctggagagagctagagatttatttgagcaagccctggat
ggttgccctgccaagtttgccaagaccatttaccttttgtatgccaaattggaagaggga
tatggattggcacgacatgccatggctgtctatgaaagagcaacccaggcagtagaaagt
gaggagaggcatcacatgttcaacatctacatcaagagagcggctgaaatttatggagtc
acgtacaccagagcaatctaccagaaagctattgaggtccttcctgatgagcattcgagg
gacatgtgccagcgatttgctgacatggagagtaaacttggtgagattgaccgagccaga
gcaatctactcttactgttcccagatctgtgatcccagggtgacagccaatttctggcag
acctggaaagaatttgagatccgccatggaaatgaagataccattagagaaatgctgagg
atcaaacgcagtgtccaggccacgtacaacacccaggtcaactttatgtcctcgcagatg
ctgaaggccacaacaagctccacaggcactgtgtcggatcttgctccaggccaaatggga
attgatgacatgaagatgttggagcagaaagctcagcagcttgctgcagaggctgagcag
gacaaacccaagctcaaagagaagatcctcttcgtcaggagtgacacatctcgcagtgag
ttggctgagctctccaaacaagccaatcctgatgagattgacattgatgatgatgacgag
gatgatgatgatgaagaccagggaccggatgaggtgcagcttgagcagaagagcgttccc
acggccgtctttggagggcttaaagatgactga
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