Acanthopagrus latus (yellowfin seabream): 119014503
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Entry
119014503 CDS
T08233
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
alat01001
]
119014503 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
alat04054
]
119014503 (ciita)
Enzymes [BR:
alat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
119014503 (ciita)
Protein kinases [BR:
alat01001
]
Serine/threonine kinases: Other
TAF1 family
119014503 (ciita)
Pattern recognition receptors [BR:
alat04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
119014503 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
AAA_16
nSTAND3
LRR_14
nSTAND_NTPase5
AAA_22
Roc
Motif
Other DBs
NCBI-GeneID:
119014503
NCBI-ProteinID:
XP_036945631
LinkDB
All DBs
Position
23:complement(8447652..8470836)
Genome browser
AA seq
1653 aa
AA seq
DB search
MLEVNDHGEDIVAMAQFAEVLDTVRLALSWASPAEVRALLEGLVEDRIISEAYSRSLSLH
RPAHGETGCKPGLDWMNSPCSDTRRYPNKGQSVEVSCQESSITLPSHTRSEPVSPTDGQT
GASSRPETDPLDWIEEHYLSTPSYQHGVGLEDEMTKLLRHAESVQTPASDSERMKRGNLE
DEKEWLEQVEEEARRIAVPVWQHWDRGRRMLLPLVPSLTASENTATSSEAQCSALNMEGE
TELAVACRTLDLYADKFNCTDLNFTLDTGATDTPKGLGFSAYNSTATTGWDLLDASPVEA
CAATDTIGGITDRLEDGLDGCWVADGTTGATEDLLCLTAGAQCGFPGLEEDIGHLLSSCE
QTDAHTNAQDNSLYSNMDHSPSISVLEDVFRVADGTDTCSSNGIADFHKDKEEEEMVDPQ
WSAKMQEVDQDPFVGPDFGNLQGAKVQEYDLDPYTGLDLGDLPDDLTEFLNEDFLGKLID
PDELFGIFGDPLLNCEDQLNSCSDVPLPPELPGPDSHQQGQAGKASNKRKRPKVSRPQRC
SDETTPSRPKRRKVAGRPKNNEAQAEPTVDQGVDTGPPSPTPSAAEMTGLSTTPPRIVHL
HPSIRFITIPDSSGYQVVQTLRLSPSVIKFPLPSASATPAYIFVPAAPPPCKHQLPPLSP
VDGAVAPVQMSSSPPGSLSDTASKAMSPTCASPVSPSSEMSPCKDSPLPQSPTVLDIPQV
VKDHIQEAKAYMSQTCQDMEAGLSLSSHYVDVQMSQRETFRSGKNTSKFLDKEIIVMGDT
DRQKSLLGRGQIFEGPNGDKPKRYIVLLGNAGIGKTTLIRRLCLDWSRDCIPQFDFVFLL
DGKALNLSEPTFSLQTLLLNISSFAPPCLDPDAVYAQILAAPKRVLIIFDGFDQLRDYET
LLQTQEKDLITSLQRDSKAQTYTVRQLYSAILQRVLLPGCTLLLSTRPRGTATQLLRRTD
SFLEVCGFTPADIETYLSKYFTDPALRASALDNLKSCSYLHLFCWNPGVCRLVCLVLEQF
KGSECLPRTLTGLCHQVLQLKMKEDSKTVQAQAEPETEISVEETTTQNTCQRKARTKSRA
QGSTRTQRARRAKNQEKEEEDVEEMKSVGEEVYRTEERELLSQLSALAWDGVKANSSVLV
SGRTISTKLKAFGHRTGLFLSYDLRTRQVVSNGETKGAGKKGSEEMGRGVKGDSARKETG
VGDDLILLWASPFLQSYLAGVHLSMSRTVTDRNFILSLPFQSGPKGRRRPQREELELTQR
FAVGLLFHKRTELQRLDSCTETAFRDMVSNKQALVTKHLEGLSHGDLSPAQVLESCHYVY
EASSTHGDDSRDSASARLVAHLATNLPEVLTFHGVPLNPSDVFAVQNILKIGGTEGRSFC
LDLEDSGIQISGLKALVGLNNINTYRACIADVITLWEQLQQSGEEELQQGAVSKFKIHPL
KATQVCHIEHLAKLVNIHMHKRLSDSSSQFDSILAEGVPAVKDLHKLEFELGPDNGILAL
PKLWELLPGLHNLQRLDLENCKLGDKGAEKLADALVSLRFLEILNLSQNCIGDQGVKKLA
TVLRDLPKLHCLSLYSNEISDVGAESLAAVLPHVASLTDLDVKYNKLTDVGAQSLGVSLR
NCTRMKTLRLWNQCIPYGVFERLQQQDSRILWH
NT seq
4962 nt
NT seq
+upstream
nt +downstream
nt
atgctggaggtcaatgaccacggagaagacatcgtcgccatggcccaattcgcggaggtt
ctggacacagtgcggctggccctgagctgggcctcacctgccgaggtccgagccctgctg
gagggtttggtggaggaccggatcatctcggaggcctacagcaggagcttgagtctgcat
cgaccggctcacggcgagacaggatgtaaaccaggtttggactggatgaattctccatgc
tcggacacccgccggtaccccaacaaaggtcagtcggttgaggtgagctgccaagagtct
tccatcactctccccagccacacaagatcagagcctgtttcaccaacggatggacaaacc
ggcgcaagctccaggccagaaactgacccactggactggattgaagaacactacctttct
acacccagctaccaacacggcgtcgggttagaagatgaaatgacgaaattgcttagacat
gcagaatcagtgcagacgcctgcaagtgatagtgaaagaatgaaaagggggaatttagag
gatgagaaggagtggttagagcaggtagaggaggaggctagacggatagctgtccccgtg
tggcagcactgggacagaggacggaggatgttgctgcccttggttccttctctgacagca
agtgaaaacacagcgacatccagtgaggcacaatgctctgctttgaatatggagggggaa
acagagcttgcagtggcttgcagaacactggatttgtatgccgacaagttcaactgtaca
gacctaaacttcactctggatacaggagccaccgacacgccgaagggcctcggtttctct
gcgtacaacagcacggcgacaaccggatgggatcttttggatgcctcacctgttgaagcc
tgtgcagcaacagacacaatcggcggcatcacagacaggttggaggacggtctcgatggc
tgctgggtagctgacgggacgacaggtgcgacagaggacctgctctgtttgaccgcaggt
gcacaatgtggctttccaggactggaagaagatattggacatttattgtcttcctgtgaa
cagacagacgctcataccaacgcacaagataactcactttactccaacatggatcatagc
ccgtcgatcagtgttctagaagatgttttcagggttgctgatggcacagacacatgcagc
agtaacggcatagcagacttccacaaggataaagaggaagaggagatggtggatcctcag
tggagtgccaagatgcaggaagtggatcaggacccgtttgtgggtcctgacttcggaaat
ctccaaggtgccaaggtgcaggaatatgatctggacccatacactggtcttgacttggga
gatctaccagatgatttgacagaattccttaatgaggatttcctggggaagttaattgac
ccagatgagctttttggcatctttggtgaccctttgttgaattgtgaagatcagctcaac
agctgcagtgatgttcccttgccacccgagctgcccggcccagacagccaccagcaggga
caggcgggcaaagcgagtaacaagagaaaaaggcccaaagtttcacgaccccagcggtgt
tctgatgagactacaccatcgaggcccaaaaggcgaaaagtagcaggtcgaccaaaaaac
aatgaggcacaagctgagccaactgttgaccaaggtgttgacacaggaccaccaagtcca
acaccaagtgcagcagagatgacgggcctctccacaactccaccaagaatcgttcatctc
catccctccattcggtttatcaccatcccagactcgtcagggtatcaggttgttcagaca
ctaaggctctccccgtcggtcattaaatttccactccccagtgcatctgctacacctgct
tacatatttgttcctgctgctccaccaccctgcaaacaccaattgccacccctctctccc
gtggatggtgcagtagcgccagtccaaatgagttcatccccaccaggatctctatcagac
actgctagcaaggccatgtctcccacttgtgcctcacctgtctcccctagcagtgagatg
tctccatgtaaggattcgcctcttcctcagtctcccaccgtccttgacattccacaggtt
gtaaaggaccacattcaggaagctaaagcatacatgagtcaaacctgtcaggatatggag
gcgggccttagtttgtcctctcattacgtggacgtccaaatgagccagagagagacattt
cgctctggaaaaaacacaagcaaattcctggacaaggagataattgtcatgggagataca
gatcggcaaaaaagcttgttgggacggggacagatcttcgagggcccaaatggagacaaa
cccaaacgctacatagtgcttcttggcaatgctggcattggtaaaaccacgctgatcaga
aggctgtgtcttgactggtcgagagactgtatcccacagtttgactttgtcttcttacta
gacggcaaagcactaaatttatcagagccgacctttagccttcagaccctgctattaaac
atctcctcttttgcccctccctgcttggacccagacgcagtgtatgctcagatccttgca
gcccctaagcgtgtgctcatcatttttgatgggtttgaccagttgcgtgactatgaaacc
cttctccagactcaagaaaaagacttgatcacatccttgcagagggacagtaaagcacag
acatacacagtaaggcagttatactcagccatccttcaaagggtcctccttccaggctgc
actcttttgctctctacccgaccaagaggcactgcaacccagcttctccggcggacggac
agcttcttggaggtgtgcggcttcacccctgcagacatagagacgtatttgtccaagtac
ttcaccgatcctgccctcagagcatctgctttggacaacttaaaaagctgcagctaccta
catctcttctgctggaaccctggagtatgtcggttggtctgcttggttttagaacagttt
aaaggttcagagtgcctaccgcgaactttaactgggctctgccatcaagtgctgcaactg
aaaatgaaagaggacagtaaaactgtgcaggcacaggctgaacctgaaacagaaatatct
gtggaggaaaccaccacccagaacacgtgccagaggaaagctcggacgaagtccagggca
cagggcagcactcgcacccaacgagcaaggagggcaaagaatcaggagaaagaagaagaa
gatgtagaggagatgaaaagtgttggtgaggaggtatataggacagaggagagagagttg
ctgtcccagctgagtgccttggcctgggatggtgtcaaagcaaactcctcagtgctcgtt
tcaggaaggactatatctaccaaactcaaggcatttggccacaggacagggcttttcctc
tcttatgacttgagaacgaggcaggttgtctcaaatggtgagacaaagggagcaggaaaa
aagggcagtgaagaaatgggaagaggagtaaaaggagacagtgcgaggaaggagactggt
gttggtgatgacctcatcctcttgtgggccagtcctttccttcagagttacttggcaggg
gtccatttgtctatgtcaaggactgtaacagatcggaacttcatcctgagtcttccgttc
cagtcaggcccaaagggacgtcggcgccctcaaagggaggagctagagctcacccagcgc
tttgcagtcggccttctgttccacaagaggacagaactgcagaggcttgactcgtgcacg
gagactgcctttagagatatggttagcaacaagcaggctttagtaacaaaacaccttgaa
ggtctgtcacatggggacttaagtcctgcccaggtcctggagtcttgccactatgtttat
gaggcaagttccacacatggcgatgacagcagagacagtgccagcgcacgactagttgct
cacctggcaacaaatcttccagaagtcctgacatttcatggagttccactcaacccatca
gacgtgttcgccgtgcagaacattctcaaaatagggggaaccgaaggaagaagtttttgt
ttggatctggaggattctgggatacagatctctggactcaaagctctggtggggctcaac
aacatcaacacatacagggcctgcattgccgatgtcatcaccttatgggagcagctgcag
cagagtggtgaagaagagctccagcaaggcgcggtgtccaaattcaagattcaccccctg
aaagccacacaagtttgccacatagagcacctggcaaaactggtgaacatacacatgcac
aagaggctgtcggacagttccagccagtttgactccattttggcagagggggtaccagct
gtcaaagacttgcacaagctggagtttgagctcggtccagacaatggtatcctggctctt
cccaagctgtgggagctgctgccaggtctacataacctacagcgcttagatctggagaac
tgtaagttaggggacaaaggagcagagaaattggctgatgctttggtctcactccgtttc
ctggagatactcaatctgtcacagaattgcattggggaccagggggtgaagaaactggca
accgtgctgagggatctgcccaaactgcactgtttaagtctttacagcaatgagatttct
gatgtaggggcagagagtctagcagctgtcctgccacacgtggcttccctcaccgacctg
gacgtcaagtacaacaagctcacagatgtgggcgcgcagagtctgggagtcagtctgaga
aactgcacacggatgaagactttgaggctgtggaaccagtgtattccgtatggagtgttc
gagagactccagcagcaggacagccgcatcctttggcattag
DBGET
integrated database retrieval system
