Acanthopagrus latus (yellowfin seabream): 119015020
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Entry
119015020 CDS
T08233
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119015020 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119015020 (skiv2l)
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119015020 (skiv2l)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119015020 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
119015020 (skiv2l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Ada3
Motif
Other DBs
NCBI-GeneID:
119015020
NCBI-ProteinID:
XP_036946450
LinkDB
All DBs
Position
3:7695173..7709624
Genome browser
AA seq
1246 aa
AA seq
DB search
MDRINVPPAGPMDLPLSLLEMGCSGRFELITHPLPDQPLPPQSTLPHGLPPTSVSLETEA
ERQFLQDPSWLPIHDIDFAFQKFPKVTQREVSVDSLLNCTPSALHTGLSVVRDPTTGMLL
DFTEVLMEDTGLSAKNSLSLLRQPGPPSESLRGSNTNYPFLPGGMEELSLDQIKKKSELE
KDVDFENDLLKVPPGLKAGMDFTNKEAKIAKPEVNLMSLLSALDDITELQPEADEKEDGK
EKQDAPKLPRTNSLEDLGIKDAVSSSAPPEKGKDEKSKPKENPEESKKWAIPVNITAPCD
DFYKRVPNPAFKWPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQISPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDTERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRH
IYVISTMKRPVPLEHYLYTGNSTKTQKEMFLLVDAVGNFLTKGYYAAVDAKKERTSKHAQ
SFGTKSTSHNTSASQDRAVWLTLLHFLSQRQQTPVVAFTFSRTRCDENARSLESMDLTTS
IEKAEIHSFFQKSLSRLRGGDRQLPQILVMRDLLKRGIAVHHSGILPILKEVTEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKAGVHEMADLHVMMLGKPTLLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSENH
RDTQTHEKRISQLKQMVSSLPPLDTDGQLSDLLPYYHTVTELRTTKEALQRAILESVNGL
KALSVGRVVVVNNKQHFNALGVILQVSNDSVNRTFTALIICEKGNEEGEGKGNNSDAFPH
LFNTALFIPEGPCSHTVQKLKLEDISAITVKTLKVIPDRIIDNYNKRQQPRFRLDPPGQA
ISTATQELLRLAEASPGGLPSLDPVNDLQLKSVDVVEDSMRLRVLQDNLREFSCINSPTF
AEQFARVKERMSVQEELDKLLFLVSDQSLSLLPEYHQRIKVLQSLQYVDSSGAVQLKGRV
ACQISSHELLLTELLFENALSPLAPEESAALLSCLVFTQNTQVEPHITNTLQEGIDRVLS
VAQRIGELQRDCGIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVVRCI
QRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggacagaataaatgtgcccccggcgggtcccatggacctgccgctgtccctgctggag
atgggctgttcaggcaggtttgagctcatcacccacccgctgcccgaccagcctttacct
ccacagagcacgctcccacatggccttcctcccaccagcgtcagcctggagacagaagca
gagagacagttcctacaggacccctcctggcttcctatacacgacatagactttgccttc
cagaagtttcccaaggtgactcaaagagaagtgagtgtcgactcactcctcaactgcact
ccgtctgcacttcacaccggcctctctgttgtcagagatccaaccacagggatgctgctg
gacttcacagaggtgttaatggaggacacaggcttgtcagcaaagaactcgctttcattg
ctccggcagcccgggcctccatcagagagccttcgaggaagcaacaccaactaccccttc
ctccctggaggaatggaggagctcagtctggaccaaatcaagaagaaatctgagctggag
aaagacgtagactttgagaacgatttactcaaagtcccacctggacttaaagctgggatg
gacttcactaacaaagaggccaaaatagcaaagccggaggtcaacctgatgtccctcctg
tccgcattggatgacatcactgaactgcagcctgaggcagatgagaaagaagacggcaaa
gaaaaacaagacgcgcccaaactacccagaactaacagtcttgaagacctgggcatcaag
gatgctgtgtcatcctcagctcccccagagaaaggaaaagatgagaaatcaaagccaaaa
gagaacccggaggaaagtaagaaatgggccatccccgtcaacatcacggcaccctgcgat
gatttctataaacgcgtccctaacccagctttcaagtggccgtttgagctggatgtcttc
cagaagcaggctgtgctccgtctggaggctcacgactccgtgtttgtagccgcgcacaca
tcggctggcaaaacagtggtggccgaatacgccatcgctctctcccagaaacacatgacg
aggaccatctacacctctcccatcaaagccctgtccaatcagaagttcagagactttaaa
aacacttttggagatgttggactcctgacaggcgacgtccagatcagtcccgagtcctca
tgtctcatcatgaccacagagatcctcaggtcgatgctttacaacgggtcagaggtcatc
agagacttggagtgggtgatctttgacgaggttcactacatcaacgataccgagagagga
gtcgtgtgggaggaggttttgattatgcttccagatcacgtcagcatcattctcctgagc
gccacagtgccaaatgccctggagtttagcgagtggattggtcgcataaagaagaggcat
atttacgtgatcagcacaatgaagcgacctgtgcctctggagcattatctctacacggga
aacagcaccaagactcagaaagagatgttcctgctggtggatgctgtcggcaacttcctc
acaaaagggtattatgcagctgttgatgccaagaaggagcgcaccagcaaacacgcccaa
tcattcggcacgaaaagtacttcgcacaacacctcagctagtcaggaccgagcggtgtgg
ctcactctcctgcacttcctgtctcagcggcagcagacgccggtggtcgcgttcactttc
tctcggacgcgctgcgacgagaacgcccgctcgcttgagtccatggacctgaccacctcc
atagagaaggccgagatccactcattcttccagaagagcctgagtcgactccgaggagga
gaccgacagctgcctcagattttggtcatgagggacctgttgaagaggggaatagccgtc
catcatagcgggatcctgccgatactgaaggaggtcaccgagatgctcttctcccgaggt
ctcgtgaaggttctgtttgccaccgagacgtttgcgatgggagtgaacatgcctgccagg
accgtggtgttcgacagcattaggaaacacgacggcacgggcttcagaaatctgctgcca
ggcgagtacattcagatggcgggcagagcaggcaggagaggcctggacgccacgggcacc
gtcatcattctgtgcaaggctggagttcacgagatggcagatctgcatgtcatgatgctg
ggtaaaccgaccctcctccagtcccagttcagactcacctacacgatgatcctcaacctg
ctgcgagtcgaagccctccgtgtgaccgacatgatgaggaggagcttttctgaaaaccac
agagacactcagacccacgagaagaggatcagccagctgaagcagatggtctcctctctg
cctcctctggacacggacggccagctgtcggacctgttgccttactaccataccgtgacg
gagctacgaaccaccaaagaggccctgcagcgcgcgattctggagtctgtgaacgggctg
aaagctctgtcagtgggtcgagttgtggtggtgaacaacaagcagcatttcaacgcgctg
ggagtcatcctccaggtgtccaatgactcggtgaatcgcaccttcacagctctgatcatc
tgtgagaagggcaacgaggaaggagagggaaaaggcaacaacagcgacgcgttccctcac
ctcttcaacacagctctcttcatacccgaaggcccttgcagccacacggtgcagaagttg
aagcttgaggacatctcggccatcacagtgaaaactctcaaagtgattccagatcgaatc
atcgacaactacaataagaggcaacaacctcgattcaggcttgacccacccggccaggcc
atctccacggcgacccaggagctcctgcgattggccgaggccagccccggtggcctcccg
agcctcgaccccgtgaatgacctccagttgaagagcgtcgacgtggtggaagactccatg
cggctccgcgtgctgcaggacaacctcagagagttcagctgcataaactcgcccactttt
gctgagcagtttgctcgggttaaggagaggatgagtgtgcaggaggagctggacaagctg
ctgttcctggtgtcggaccagtccctgtctctgctgcctgaataccatcagagaatcaag
gtgctgcagtctctccagtacgtcgacagcagcggggcggtgcagctgaaaggccgcgtc
gcttgtcagatcagcagccatgagctgctgctgaccgagctgctgttcgagaacgccctg
agcccgctggcgcccgaggagagcgccgccctgctgtcctgtctggtcttcacgcagaac
acgcaggtggagccgcacattaccaacacactgcaggagggcatcgatcgggtgctttca
gtggcccagcgtatcggagagctgcagagggattgtgggataccacagactgctgaggag
tttgttggccagttcaagtttggcctgacagaagtggtttactgctgggccagaggcatg
ccgtttgcagagatcgcccagctgacagacgtccaggagggcacggtggtgcgctgcatc
cagcgcctggacgaggtgctgaaggaggtccgacaagccgcccgcatcgtgggagactcc
gtcctggggagcaagatggagaaggcctccctggccatccgcagggacatcgtcttcacc
gcctccctctacacccactga
DBGET
integrated database retrieval system
