Acanthopagrus latus (yellowfin seabream): 119015386
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Entry
119015386 CDS
T08233
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04510
Focal adhesion
alat04512
ECM-receptor interaction
alat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119015386 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119015386 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119015386 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alat00536
]
119015386 (col1a2)
Glycosaminoglycan binding proteins [BR:
alat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119015386 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
119015386
NCBI-ProteinID:
XP_036947224
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All DBs
Position
3:17259207..17276280
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AA seq
1356 aa
AA seq
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MLSFVDTRILLLLAVTSYLASCQYSARVKGPRGEKGPRGDRGPKGPNGRDGKPGLPGPAG
PPGPPGLGGNFAAQYDGAKAPDPGPGPMGMMGARGPPGPPGPPGPQGHTGHAGEPGEPGQ
TGPVGARGPPGPPGKAGEDGNNGRPGKPGDRGAPGPQGARGFPGTPGLPGMKGHRGYTGL
DGRKGEPGAAGAKGEPGAHGAAGSPGLAGSRGMPGERGRAGPAGPAGARGADGNVGPAGP
AGPLGAAGPPGFPGGPGPKGEIGPAGATGPAGPQGARGEPGANGAVGPVGPPGNPGANGL
NGAKGAAGTPGVAGAPGFPGPRGGPGPQGPQGAAGQRGLGGDPGPQGVKGDGGPKGEPGN
SGPQGPPGPQGEEGKRGPAGELGATGPTGNRGARGAPGGRGMPGAEGRTGPIGMPGARGA
TGAGGPRGPPGDAGRAGEPGPAGLRGLPGSPGSSGPPGKEGPAGPAGQDGRGGPPGPTGP
RGQPGNIGFPGPKGPSGEPGKPGDKGATGPTGLRGAPGPDGNNGATGATGPAGGPGEKGE
QGPAGAPGFQGLPGPAGPAGEAGKPGDRGIPGDQGVAGVAGGKGERGNPGAAGASGAQGP
MGARGPAGAPGTDGGKGEPGAAGAAGGPGHQGPGGMPGERGAAGTPGPKGEKGEPGHKGP
DGNAGRDGARGLPGPAGPPGPTGANGDKGEAGSFGPAGPAGPRGAPGERGEVGPAGSSGF
AGPPGADGQPGARGERGPAGGKGEVGPAGAAGPAGQSGPPGPAGASGPAGARGDTGPSGL
TGFPGAAGRVGPAGPAGIVGPPGSAGPAGKDGPRGLRGDPGPAGPSGEQGMVGPPGLAGE
RGSSGESGPPGPSGAPGTSGPLGLQGFVGLPGARGDRGSPGGPGGPGEAGRVGPAGAPGA
RGPPGNIGLPGMTGPQGEAGREGSPGNDGPPGRPGVAGFKGDRGEPGPAGSMGLAGAPGP
AGPTGGAGRPGNRGEPGPGGPSGPVGQAGARGAAGPAGSRGEKGVAGDKGERGMKGLRGH
PGLQGMPGPSGPSGDTGSAGPNGPAGPRGPAGPHGPPGKDGRAGGHGTIGSPGARGPPGY
VGPAGPPGSPGLPGPPGPAGGGYDVSGYDEYRADQPAMRAKDYEVDATIKSLNTQIENLL
TPEGSRKNPARTCRDIKLSHPEWTSGFYWIDPNQGCTNDAIKVFCDFSTRETCIYAHPES
IAKKNWYRSTENKKHVWFGETINGDSEFTYNDETISSQSMATQLAFMRLLSNQASQNITY
HCKNSVAYMDGESGNLKKAVVLMGSNDVELRAEGNSRFTFSVLEDGCTTHTGEWSKTVIE
YRTNKPSRLPILDIAPLDIGGAEQEFGLDIGPVCFK
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacccggattctgttgctgcttgcagtaacttcatacctagca
tcatgtcaatactcggcgagagtcaagggccccagaggagagaagggacctcgaggtgac
aggggtcctaagggcccaaatggaagagatggcaaacccggactccctggccccgctggc
cccccaggtccccctggactcggaggaaatttcgctgctcagtatgatggtgcaaaagcc
cctgatcccggccctggacccatgggtatgatgggtgctagaggccctcccggacctcct
ggacctcctggtcctcagggacacactggacacgctggtgagcccggagagcctggacag
actggccccgttggtgctcgtggcccccctggaccccctggcaaagctggagaggacggt
aacaacggcagacccggcaagcccggagacagaggtgcccccggcccccagggtgctcgt
ggattccccggaacccccggacttccaggaatgaagggacacagaggttacactggtctg
gatggacgtaagggagagcccggtgctgctggcgccaagggtgagcccggtgcacacgga
gctgctggaagtcctggactggctggatctcgtggtatgcctggtgagagaggtcgtgct
ggccctgctggccccgctggtgctcgtggtgctgatggcaatgttggccccgccggtcct
gctggtcccctcggtgctgctggtcccccaggtttccccggtggccccggccccaaggga
gagattggacccgctggagctactggcccagctggacctcagggagcaagaggagagccc
ggtgccaatggtgctgttggccccgtcggtcctcctggaaaccccggtgctaatggcctg
aacggagccaagggagctgctggtacccctggtgttgctggagctcctggcttccccgga
ccaagaggaggacctggaccccagggccctcagggtgctgctggacagagaggtcttggt
ggagatcctggccctcagggagtgaagggagatggcggtcccaaaggagagcctggtaac
tctggacctcagggaccccctggacctcagggtgaggagggtaagagaggacccgctggt
gagcttggtgctactggacctactggcaaccgtggagctagaggcgctcctggcggccgt
ggtatgcctggtgctgagggaagaactggcccaattggtatgcccggtgcccgtggtgcc
accggtgccggtggacctcgtggaccccctggagatgctggccgtgctggtgagcctggc
ccagctggtctcaggggtctcccaggaagccctggaagctctggacccccaggaaaggag
ggacctgctggtcctgctggacaagatggccgcggtggacctcccggcccaaccggacct
agaggccagcctggaaacatcggcttccccggacccaagggaccttctggtgagcctggc
aagcctggagacaagggagccaccggccccactggactgagaggagctcctggacctgac
ggcaacaacggagccactggtgccactggacccgctggtggtcctggtgagaagggagag
cagggacccgctggagctcctggcttccagggtctgcctggacccgctggacctgctgga
gaggctggcaagcccggagacagaggtatcccaggagaccaaggagttgctggagttgcc
ggtggtaagggagagcgtggtaaccccggtgctgctggtgcctctggagctcagggacca
atgggagcccgtggacctgctggagcccctggaactgatggtggcaagggagagcctggt
gctgctggagctgctggtggtcctggacaccaaggacccggaggcatgcccggtgagcgt
ggagcggctggaacccctggacccaaaggagagaagggagagcccggacacaaaggacct
gatggaaacgctggcagagatggagcccgtggtctgcctggacccgctggacctcccgga
cccactggagccaatggtgataagggtgaggccggctccttcggacctgctggacccgct
ggacctcgtggagcccctggagagcgtggagaggttggacctgctggatcttctggattc
gctggaccccctggcgctgacggtcagcctggagcaagaggagagcgtggacctgctgga
ggaaagggagaggtcggccccgccggcgctgctggacccgctggacagtctggacctcct
ggtcctgctggtgcttctggacctgctggcgctcgtggagacaccggaccttctggtctg
actggtttccctggtgctgctggtagagttggacccgccggtcccgctggcattgttgga
ccccctggctctgctggtcccgctggtaaagatggtcctcgtggactccgtggtgaccct
ggtcccgctggtccctctggagagcagggtatggttggaccacctggtctggctggagag
aggggatcctctggagagtctggtcctcctggtccttctggtgctcctggaaccagcggt
cctcttggacttcaaggatttgttggtctgcctggtgctagaggagatcgtggttctcct
ggtggtcctggtggtcctggagaggctggtagagttggacccgctggtgcccccggagcc
cgtggtcctcctggaaacattggtctgcctggtatgaccggacctcagggagaggctgga
cgtgagggtagccccggtaacgatggaccccctggtcgtcctggagtcgctggattcaag
ggagaccgtggtgagcccggacctgctggttccatgggacttgctggtgcccccggacct
gctggacccactggaggagctggcagacctggaaaccgtggagagcctggccccggaggt
ccctcaggacccgttggacaggccggagctagaggcgctgctggacctgctggatcccgt
ggtgagaagggagttgctggagacaagggagagagaggcatgaagggactacgtggacat
cctggtctccagggaatgcccggaccatctggaccctccggagacactggatctgctgga
cctaacggacctgctggacccagaggacctgctggaccccacggaccccctggtaaggat
ggtagagctggtggccatggaaccatcggttctcctggtgctcgtggaccccctggatac
gttggacccgctggtcctcctggatctcccggtctgcccggacctcccggccccgctggt
ggtggatacgatgtttctggatacgatgagtacagagctgatcagcccgccatgagagcc
aaggactacgaggtcgatgccaccatcaagtccctcaacactcagatcgaaaacctgctc
acccctgagggatccaggaagaaccccgcccgcacctgccgtgacatcaagctcagccac
cccgagtggaccagcggattctactggattgaccccaaccagggctgcaccaacgatgcc
atcaaggtcttctgcgacttctccacccgcgagacctgcatctatgcccaccctgagagc
atcgccaagaagaactggtacagaagcaccgagaacaagaagcacgtctggttcggagag
accatcaacggagactctgagtttacctacaacgacgagaccatcagctcccagagcatg
gccacccagctggccttcatgcgcctgctgtccaaccaggctagccagaacatcacctac
cactgcaagaacagcgttgcctacatggatggtgagagcggcaacctgaagaaggctgtg
gtgctcatgggctccaacgacgtggagctgagggccgagggcaacagccgcttcaccttc
tccgtgctggaggacggctgcactacacacactggtgaatggagcaagacagtgattgag
tacagaacaaataaaccatctcgcctgcccatcctcgacattgcacctttggacattggt
ggagctgaacaggagtttggtttggacattggcccagtctgtttcaaataa
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