Acanthopagrus latus (yellowfin seabream): 119016570
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Entry
119016570 CDS
T08233
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119016570 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alat03021
]
119016570 (taf5)
03036 Chromosome and associated proteins [BR:
alat03036
]
119016570 (taf5)
Transcription machinery [BR:
alat03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
119016570 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
119016570 (taf5)
Chromosome and associated proteins [BR:
alat03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
119016570 (taf5)
STAGA complex
119016570 (taf5)
TFTC complex
119016570 (taf5)
SAGA complex
119016570 (taf5)
SLIK complex
119016570 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_Nup120_160
PEP5_VPS11_N
WD_LRWD1
VPS8_N
Beta-prop_WDR11_2nd
PROPPIN
CDK5RAP3
LisH_PAC1
LisH_TPL
Motif
Other DBs
NCBI-GeneID:
119016570
NCBI-ProteinID:
XP_036948397
LinkDB
All DBs
Position
1:23880160..23885683
Genome browser
AA seq
751 aa
AA seq
DB search
MAAVQGGLVDAVEKKDIKTEPSEDSGGNNNANDGRILSPPPGSSASAPGGNKTPAGAPED
QQTLLAVLQFLKKNNLAESVEILRREAGLPEDALDLKAGDSSGAGSGGAGDTVDLEGEDA
SSLLSRVTVSSSAAAQAPTKVAPSEDQPDVNVVLSAYSQQGDPALYGVYYSGLKRFIESV
LDCHRAELSQVFYPLFVHMYLELVYNNHENEAKVFFEKFSGDQECYYEDDLRVLSSLTKK
EHMRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRS
KSQIDAMSGSLAGEAKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKD
SMGSKSKKQDPNAPSQTRIPLPELKDSDKLDKIMYMKEATKRIRLGPDNLPSICFYSFLN
AYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIM
DEKTASESKILYGHSGPVYGISFSPDRNYLLSCSEDGTIRLWSLQTFTCLVGYKGHNYPV
WDTQFSPHGYYFISGGHDRVARLWATDHYQPLRMFSGHLADITATRFHPNSNYVVTGSSD
RTIRLWDVLTGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMIGELK
GHTDTIYSLKFSRDGEILASGSMDNTVRLWDAMKAFDDLETDDFTAATGHIHLQDNSQEL
LLGTYMSKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacaaggtggtctggtcgacgcggttgaaaagaaagacataaaaacagaa
ccatcggaagatagcggtggaaataacaatgcgaacgacggcagaatcctctctccgccc
cccggctccagcgcttcggcccctggaggtaacaaaaccccggccggagccccggaggac
cagcagacgctgttggcggtcctgcaattcctcaaaaagaacaatctggccgagtccgtc
gaaattttgcgccgtgaagcgggattaccggaagatgcgttggacctgaaggcaggtgac
tcctcgggggccggttcgggtggtgccggggacaccgtggacctggaaggagaagatgcg
agctctctgctgagccgggtgaccgtctcatcctccgctgcagctcaggcgccaaccaaa
gtagctcccagtgaggatcagccggatgtcaacgtggtgctgtcagcttacagccagcag
ggagacccggcgctgtacggggtttactacagtggcctgaagaggttcatagaatcggtt
ttggactgtcaccgggcagaactgtcccaggtcttctacccactgtttgtgcacatgtat
ctggagctggtctacaacaatcacgaaaatgaggccaaggtgttctttgaaaagttcagc
ggggatcaagagtgctactacgaagacgacttgcgtgttttgtctagcctgaccaagaag
gagcacatgagaggcaacgagaccctgctggacttccgcaccagcaaatttgtgctgcga
atctcccgcgactcttaccagctgctcaagaggcacctgcaggagcgtcagaacaaccag
atctggaacatcatccaggagcacctctacatcgacatcttcgatggcatgccacgcagc
aagagccagatcgacgccatgtctggcagcttggctggagaggctaagcgggaggctaat
aaggctaaggtttactacggcctgctgaaggaaccagagattgagctgcctctggatgat
gaggatgaggaggcggagaacgaggagggtaaacccaagaagaagaaacccaagaaggac
agcatgggctccaagagcaagaagcaggatcctaatgccccctcacagactaggatacct
ctaccagaactgaaggattcagacaagctggacaagatcatgtacatgaaggaggccacc
aagaggatccgcctgggaccagataacctcccctccatctgcttctactcttttcttaac
gcttaccagggtctgacagcagtggacttcacagacgactctagcctgattgcaggaggc
ttcgcagactctacagtgcgggtgtggagcgtcacgccaaagaagctgcgcaaggtcaag
tccgcggcagacttgaatctgattgacaaagagtccgacgatgtgctggagaggatcatg
gatgagaagacggccagtgagtcaaagatcctctacggacacagtggcccagtgtacggc
atcagcttcagtccagacagaaactacttgttgtcgtgttctgaagatggtactatcagg
ctgtggagtctccaaacatttacttgtctggtgggctacaaaggccacaactaccctgtg
tgggacacccagttttcccctcatggttattattttatctctgggggacatgacagagtc
gcccgtctgtgggcaacagaccactaccagcccctgcggatgttttctggtcacctcgct
gatatcactgccacacgtttccaccccaactccaattatgtcgtcacagggtcgtccgat
cgcaccatccggctctgggatgtcctgaccggaaactgcgtccgcatcttcaccggtcac
aagggtcctatccatgcactagccttctctcccaatgggaagttcttggcttcaggagcc
actgatggcagagttctcctgtgggacattggtcacggactcatgatcggagagcttaaa
ggccacacagacaccatctactccctcaagttcagcagagacggagagatcctcgcatcc
ggctccatggacaacacagttcgtctgtgggatgctatgaaagcgtttgatgatttagag
acggatgatttcacagcagctacaggacacatccatctacaggataactcccaggagctg
ctgctggggacctacatgtctaaatccacacctgttatacaccttcacttcacccgcagg
aacctgctgctagccgctggggcctacaatccatga
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