Acanthopagrus latus (yellowfin seabream): 119016666
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Entry
119016666 CDS
T08233
Name
(RefSeq) probable histone deacetylase 1-B isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03082
ATP-dependent chromatin remodeling
alat03083
Polycomb repressive complex
alat04110
Cell cycle
alat04330
Notch signaling pathway
alat04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119016666
03083 Polycomb repressive complex
119016666
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
119016666
04350 TGF-beta signaling pathway
119016666
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
119016666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
alat03036
]
119016666
Enzymes [BR:
alat01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
119016666
Chromosome and associated proteins [BR:
alat03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
119016666
HDAC complexes
Sin3A-HDAC complex
119016666
BRAF-HDAC complex
119016666
REST complex
119016666
SHIP complex
119016666
MiDAC complex
119016666
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
119016666
Heterochromatin formation proteins
Other heterochromatin formation proteins
119016666
Chromatin remodeling factors
NuRD complex
119016666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Glypican
Motif
Other DBs
NCBI-GeneID:
119016666
NCBI-ProteinID:
XP_036948652
LinkDB
All DBs
Position
3:21769141..21777299
Genome browser
AA seq
482 aa
AA seq
DB search
MALSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAS
GEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAG
ALKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGG
GGYTIRNVARCWTYETAVALDCSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEDEEDPDKRVSIRAHDKRIACEEEF
SDSEDEAEGQGGGRRNAANHKKAKRVKKEDEKEGEEKKEVKEEEKEEEKMDTSGPKEEVK
TT
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtctcaaggaacaaagaaaaaagtttgctattactatgacggggatgtgggg
aactactactatggccagggccatcccatgaaaccccacaggatccgcatgacacacaac
ctccttctcaactatggactttataggaaaatggagatctatagaccacacaaagccagt
ggtgaagagatgacgaaataccacagtgatgactatattaagttcctgaggtccattcga
ccagacaacatgtctgagtatagcaaacagatgcagagatttaatgtcggagaggactgt
ccagtgtttgatggtctgtttgagttttgccagctgtcaacaggtggatctgtagctggt
gcactgaagctgaacaagcagcagacagacatcgccatcaactgggccggcggactccac
cacgccaagaagtcggaggcctctggcttctgctacgtcaacgacatcgtcctggccatc
ctggagctgctcaagtaccaccagagggtgttatacatagacattgacatccaccacggt
gatggagtggaggaggccttctacaccaccgacagagtcatgactgtctctttccacaag
tatggggaatacttccctggcactggagatctgagggacatcggagctggaaagggcaaa
tactatgcagtgaactacccacttagagacggtattgacgatgagtcctatgaagccatc
ttcaaacctatcatggctaaagtcatggagatgtaccagcccagtgcagttgtgctccag
tgtggagctgattctctttctggagacagactgggctgcttcaacctcaccatcaaaggt
cacgccaaatgtgtcgagtacatcaaaagtttcaacctgcccctgctgatgcttggtggt
ggaggctacaccatccgcaacgtggcacgctgctggacctacgaaaccgcagtagccttg
gactgctccatccccaacgagctgccctacaatgattactttgagtactttgggcctgac
ttcaaattgcacatcagcccatccaacatgaccaaccagaacaccaacgaatacctggag
aagatcaagcagcgtctctttgaaaacctccgtatgctgcctcacgcccctggcgtccag
atgcaggcgatccccgaggacgctccccaccctgacagcggagacgaggatgaggaggac
cccgacaaacgcgtgtcaatccgggcccacgataagaggatagcctgtgaggaggagttc
tctgactctgaggatgaggcggagggccagggaggaggccgcaggaacgcagccaaccac
aagaaggcaaaacgagtgaagaaggaggacgagaaggaaggagaggaaaagaaagaagtg
aaagaggaggagaaggaggaagagaagatggacacatcaggaccaaaagaagaggtgaag
acaacttga
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