Acanthopagrus latus (yellowfin seabream): 119016673
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Entry
119016673 CDS
T08233
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
alat00535
]
119016673
Proteoglycans [BR:
alat00535
]
Extracellular matrix (ECM) proteoglycans
Others
119016673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
DUF4959
VWA_3
DUF4992
Motif
Other DBs
NCBI-GeneID:
119016673
NCBI-ProteinID:
XP_036948665
LinkDB
All DBs
Position
3:complement(1550265..1731582)
Genome browser
AA seq
1934 aa
AA seq
DB search
MQFSVRLSLCLLGFVLVSLFPQPARGQVSSPRRFRAKILSPNKLHVSWKEPKGAFESYKV
VYTTLPDGEQKEVQVSKQDAKLVIGDFDPLKEYNFKIFAVSGQQQSKPLQAKHEAQRSGI
AMVQSQRTRDSSVTAENNEISEAEEGFMCNTAAISDIVILVDGSWSIGRINFRLVRTFLE
NLVRAFNVGSDKTRIGLAQYSGDPRIEWHLNAHSTKEAVIDAVKNLPYKGGNTLTGLALT
FILENSFKPEAGSRPGVPKIGILITDGKSQDDVLPPARNLRDAGIELFAIGVKNADELEL
KAIASPPEETHVYNVADFSVMSDIVEGLTKTVCDRVDKLDKEIKGGAAPAPPPTSVSPPR
DLVTSDITARSFRVAWTHAPGQVEKYRVVYYPASGGQPDEKVVQGTENSVELNYLNSLTE
YQVAVFAIYRSSASEALRGSATTLALPMVNDLELFDITHSTMMVRWKVAAGATGYMILYA
PLTEGDPADEKEVKVADSVNEVELEGLTPATEYTVTVYAMYGEEASDPMTSQQTTLPLTP
ARNLRFSDVDHSSARLSWDASSRKVKGYRIMYVKTNGVQTNEVDVGSVTTWLLRNLTSLT
EYTVGVFAIYDEGQAEAVTDSFTTKTVPDPLDLKSSDISTDSFRVSWQHAASDVVLYRLT
WTPTDGGDSEEVLVDGHINTYLIKGLSPASEYEVLLAAIYNNEAESDEVILVESTIKRTT
TVATTTTTTEAPRFGVRNMRIDEETSFSVRVSWQPVDSRNVRHYRLNYVSSKGDRAEETR
TVPTGQSSLVLQPLLSDTEYKVAITPVYPEGDGPPISRMGRTLPLSAPKNLRVSEEWYNR
FRISWDVPPSPTMGYRVVYQPVSAPGPALETFVGEDVNTMLIVNLLSGTEYSVKVIASYT
TGSSEALSGRAKTLYLGVTNLNIYQVRMTSLCTQWQPHRHASAYRVVLESLPSGQKQETK
LGGGASRHCFNNLKPNTQYKISVYAQLLDGTEGPGVSATERTLPVPTPAPTKPPTTTPLP
TIPPAKEVCKAAKADLVFLIDGSWSIGDDNFLKIIRFLYSTTGALDRIGPDGTQVAIVQF
SDDARTEFKLNSYNDKERLLDAINKISYKGGNTKTGRAIQHVKENIFTAAAGLRRGIPNV
LVVLTDGRSQDDVNKVSKEMQMAGYIVFALGFADADYGELVSIASKPSDRHVFFVDDLDA
FKKIEEKLVTFVCEAATATCPSVPMSGSTTPGFRMMELFGLVENRYNSVSGVSMVPGTFN
TFPCFHLHSDAFLAQPTKYLHPEGLPSDYTITLLFRLLPDTPEEPFALWEILNKNNEPLV
GVILDNGGKTLTFFNNDYKGEFQTVTFEGPEIKKLFYGSFHKLHIAISKTSAKVVIDCKM
VAEKNINAAGNITTDGVEVLGRMVRSRGNKDNSAPFQLQIFDIVCSTSWANRDKCCELPG
LRKEADCPAMPKACTCTQDSKGPPGPAGPPGGPGIRGARGDRGEPGPVGPTGPVGETGVP
GPQGPQGPQGPSGRTIIGPPGASGERGQKGDAGQQGNQGIPGRPGGPGREGPAGQRGLPG
KDGPQGRPGPTGTMGTPGAPGAPGTTGPPGKQGELGPPGPPGGKGEKGERGDLQSTSSVQ
AIARQVCEQLIQSHMARYNSILNQAPSPPVSIRTVPGPPGEPGRPGSPGSQGEQGPPGRP
GSHGQPGSSGQPGERGQPGEKGEKGSPGVGVQGPRGPPGPPGAQGQGRPGNQGPSGRPGN
PGSPGRPGVPGPVGSSGPPGYCDPNSCVGYNVGASSTKSRRPSAPSQEVVVVEGSVSSEV
DEDVGGESVISGVTTETRSGHLSCRQMKSIMGNFSFTSVQTDVDLSELITPGRRSETRQS
RLTEVLFRPETKQTPAHVTFSHLSQTETSYCSISRLFSGFSLSDSNWTSRRPKTPMCSQK
HCEVTQKLCNRLLL
NT seq
5805 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctcagtcagactgagcctctgcctgctgggcttcgttctcgtctctctgttt
cctcagccagcgcggggccaagtttcatcgccccggcgatttcgcgccaaaatcctgagc
cccaacaagctgcatgtgtcgtggaaagagccgaaaggagcgtttgaaagctacaaggtt
gtttacaccacactgccagatggagagcagaaggaggttcaggtttcgaagcaggacgca
aagctggtcatcggagactttgaccccttgaaagaatacaactttaagatatttgcggtc
agtggacaacaacagagcaaaccacttcaggccaaacatgaagctcagcgatcaggcatc
gcgatggttcagtctcaaaggacacgagatagcagtgtcacggcggagaacaacgagatc
tcagaagctgaagaggggtttatgtgtaacactgcggccatatccgacattgttattctg
gtggatggatcctggagtatcggccgcatcaacttccggttggtcaggacgttcctggaa
aacctggtcagggcgttcaatgtggggtctgacaagaccaggatcggcctggctcagtac
agtggagacccccggatcgagtggcatcttaacgctcatagcaccaaagaggctgtgatc
gatgctgtgaagaacctgccgtataaaggagggaacacactgacaggtctggctctgacc
ttcatcctggagaacagcttcaaaccagaggctgggtccaggcccggcgttcccaagata
ggaatcctcatcactgacgggaagtcgcaggatgacgtgttgccccctgcacggaacctg
agggacgctgggatagaactgtttgctatcggtgtgaaaaatgcagatgagctcgagctg
aaggcgatcgcctctcctcccgaggaaacccacgtctacaatgtggcagacttcagcgtg
atgagcgacatcgtggaaggactcaccaagaccgtgtgcgaccgagtggacaagctcgac
aaggagatcaaaggtggagcagcacctgcccctccacccacctccgtgtctccaccccgc
gacctggtgacgtctgatatcacggctcgcagtttcagggtggcatggacgcatgcaccg
ggtcaggtggagaagtaccgcgtggtttactacccggccagcggaggacagccagatgaa
aaagtggtccaggggacagagaacagtgtggagctgaactacctgaactctctgaccgag
taccaggtggcagtttttgccatctaccgcagctctgccagtgaggctctgagaggaagt
gctaccacactggccctgccgatggtgaacgacctggagttgtttgatatcactcacagc
accatgatggtccgctggaaggtggccgccggggccactgggtacatgatcctgtacgcc
ccgctgaccgagggagatcccgctgacgagaaggaggtgaaggtggcggactcggtgaac
gaggtggagctggagggactgactccagccacagagtatacggtgacggtgtacgccatg
tatggagaggaggccagcgaccccatgaccagccagcagaccacattgccactgacgccg
gcgaggaacctgcgtttctcagatgtggaccacagctccgctcgactcagctgggacgcc
agttccaggaaggtcaaaggctatcgcatcatgtatgtcaagaccaacggagtccagacc
aatgaggtggatgttggcagtgtgacaacctggttgctgagaaacctgacctcgctgacg
gagtacaccgtgggtgtcttcgccatctacgacgagggacaagccgaggctgtgactgac
agcttcaccacaaagaccgttccggacccgctggatctgaagagcagtgacatctcaaca
gacagcttcagggtgtcatggcaacacgcagcctctgatgtggtgttgtaccgactcacc
tggacgcccaccgatggaggagacagtgaggaggttctggtggacggacacattaacacc
tacctgataaaaggactcagccctgcgtcagagtacgaggtcttgcttgctgcgatctac
aataacgaggcagagagtgatgaagtaatcctcgtggagtccaccattaaaagaacaacc
acagtcgctacgacaaccaccaccacagaagctccgcggtttggagtgaggaacatgagg
atcgatgaggaaacctctttcagtgtgcgggtttcctggcagcccgtcgactccagaaat
gtccgacattatcgactgaactacgtcagctccaagggagacagagcagaggagacgagg
acggtgcccacgggtcagagcagcctggttctgcagcctctgctgtcagatactgagtac
aaagtggccatcactcctgtttaccctgaaggagacggaccaccgatatcacgaatgggc
cgaacgcttcctctttcagctccaaagaacctgcgagtatcagaggaatggtacaaccgc
ttcagaatcagctgggatgttccaccttcacccacgatgggctacagggtcgtttaccag
cctgtatcggcccctggaccggctctggagaccttcgtgggagaagacgtgaacaccatg
ctgatcgtcaacctgctgagtgggacggagtacagtgtcaaggtcatcgcctcctacacc
accggatccagcgaggctctttcaggacgggccaagaccttgtacctgggggtgaccaac
ctgaacatataccaggtgaggatgaccagcttgtgcacccagtggcagcctcaccgacac
gccagcgcctacagagtcgtcctcgagtctctgcccagtggtcagaaacaggagacgaag
ctgggtggaggagccagcagacactgtttcaacaacctgaagcccaacacgcagtataag
ataagtgtgtatgctcagctgctggacgggactgaaggacctggagtctctgcgactgag
aggacactacccgttccaacaccagcaccgaccaagccccccaccaccacgccgttaccc
acaattcctcctgccaaggaagtctgtaaggccgccaaagctgacctggtcttcctgatt
gacggctcctggagtatcggcgatgacaacttcctgaagatcatccgcttcctgtacagc
accaccggagctctggaccggatcggcccagatggcacacaggtggccatcgtccagttc
agcgacgacgcccggactgagttcaaactgaactcgtacaacgacaaggagcgactgctg
gacgccatcaacaagatctcctacaagggaggaaacaccaagacaggtcgagccatccag
cacgtgaaggagaacatcttcacagcagcggcaggactcaggagaggaatccccaacgtc
ctcgtggtcctgaccgacggccgatctcaggacgacgtcaacaaggtctctaaggagatg
cagatggcaggttacatcgtgtttgcgctcggcttcgctgatgccgactacggtgagctg
gtgagcatcgccagtaaacccagcgacagacacgtcttcttcgtggacgacctggacgct
ttcaagaagatcgaagagaagctggtgacctttgtgtgtgaggcagccacggccacttgt
ccatctgtgccgatgagcggcagcacaacaccaggtttccgtatgatggagctgttcggg
ctggtggagaatcggtacaacagcgtctcaggtgtttccatggtacccggcaccttcaac
accttcccctgtttccacctgcacagtgatgctttcctggcacagccaaccaagtatctc
caccctgaagggctgccctctgactacaccatcaccctgctgttcagactgctgcccgac
actccagaggagcccttcgccctctgggagatcctcaacaagaacaacgagccgctggtg
ggagtcatcctggacaatggaggaaaaactctgactttcttcaacaacgactacaaagga
gagttccagacggtcaccttcgaagggccggagatcaaaaaacttttctatggcagcttc
cataagctccacattgcgatcagcaagacgagcgccaaggtggtgatcgactgcaagatg
gtggccgagaaaaacatcaacgcagccggaaacatcaccacggacggagtggaagtcctg
ggcaggatggttcggtccagagggaacaaagacaactctgcaccgttccagctccagatc
tttgacatcgtctgcagcacgtcgtgggcaaacagagacaaatgctgcgaacttcctggt
ctgaggaaggaggcagactgcccagccatgcccaaagcctgcacctgcacccaggacagc
aaaggccctcccggccctgctggacctccaggaggcccagggatcagaggagccagaggt
gatcgtggagagccaggccctgtggggccgactggtccagtgggtgaaacaggtgtacca
ggacctcaaggacctcaaggaccacagggacccagtggacgcaccatcataggaccccca
ggtgcttctggagagcgaggacagaaaggtgatgcaggacaacaaggaaaccagggaatc
cctggcagacctggaggaccaggcagagaaggaccagcaggacagaggggactgccgggc
aaagacggcccacagggcagaccgggtcctacaggaactatggggactccaggagccccc
ggggccccaggaacaacgggccctccaggaaaacaaggagagctgggaccaccgggtcct
cctggaggcaaaggggagaaaggtgaacggggagaccttcagtccacatcgtcagtccag
gccatcgccaggcaggtctgcgagcagctcattcagagccacatggcgcgctacaactcc
atcctgaaccaagcacccagtccaccagtctccatccgtacagtaccaggacctccagga
gagcccgggagaccgggatctccagggtctcagggagaacagggacctccagggagaccc
ggttcacatggacaaccaggatcaagcggacaacctggagaaagaggtcaaccaggtgag
aagggcgagaagggatctccaggtgtcggagtccaaggccccagaggacctccaggaccc
cccggtgcccaggggcagggcagacctggcaaccagggtccctcagggcgacctggaaat
cctggatctcctggtcgacccggggttcccggacctgtcggctcctctggccctcccggc
tactgcgacccgaactcctgtgtgggctacaatgttggagcttccagcacaaagagtcga
cgtccgtcagctccgtcacaggaagtcgtcgtggtcgaaggaagtgtaagcagtgaggtg
gatgaggatgtgggcggggaatcggttatctccggcgtcaccacggagacgagatcagga
catctgagctgccgacagatgaaaagcatcatgggaaacttttctttcacctcagttcag
actgacgtcgacctatcagagctcatcacgcccggcagacgcagcgagacgagacaaagc
cgactcacagaggttctgttcagacccgaaaccaaacagacaccagcacacgtcaccttc
tctcatctctctcagacagaaacatcgtattgttccatctcacgtcttttctcaggtttt
tctttaagcgactccaactggaccagcaggaggccgaagacaccgatgtgttcgcagaaa
cattgtgaagtaacacaaaagttgtgcaatagattgttgctgtga
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