Acanthopagrus latus (yellowfin seabream): 119016681
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Entry
119016681 CDS
T08233
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
alat04131
]
119016681 (vps50)
Membrane trafficking [BR:
alat04131
]
Protein recycling
Others
EARP complex
119016681 (vps50)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
119016681
NCBI-ProteinID:
XP_036948688
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All DBs
Position
3:16999407..17098357
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AA seq
966 aa
AA seq
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MQKIKSLMARQGLKSPQESMADLSPVENLRIPSKEELRELREQPIDPQAEQEIIDSIEEV
YFSTDSFDMVQHELEKLPPELNLQELEEYRDKLKRQQAAVSKKVADLILEKQPSYVKELE
RVTALQTNLQLAAVICTNARRQLSVAKEGFTEASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVSHYTKVQLAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITLDSYIPCLTDLCKALWEVMLSYHRTMQWHEEHDKQDASPTDEA
AAAESDESVVDRSYVKKKLEHGLTRIWQDVQLKVKAYILGTDMSNFKYDDFIVVLDVISR
LMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRARLEELRMFLENETWELCPVKSNFNIA
QLHEFKFMGQCRSPSVSPSRQAASSTGPAPEQLSLFQQYLQEGNPFEMPAEHREEETEDV
LASNGYESDELEKSVYQDYDSDSDVPEELKQDFVDEQTGDVPLKSVSRETIRSKKKSDYN
LNKTNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRND
MYESSGLGLISSRLRTTLNRIQESLIDMEALGENAGVHGPAEDRKEKVPSPHLSQMVVLT
NSGTLYGLAQRVVATESLVFLAEQFESLQSHLDTMMPAAKKPFLQQFYSQTVSTASELRK
PIYWIVAAKAIDYEQMLLLMAGVKWDIREIMSQHNVYVDVLLKEFEQFNKRLGDVSRHVR
IPLPVSNVLWEHCIRLANRTLVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDLRPIP
DKEFVETYIKAYYLTENDMEQFIKNHREYSMKQLANLVNVCLGSHINKKARQKLLAAIDD
IDRPKR
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtctctgatggcccggcagggtctgaagagcccgcaggagagcatg
gcagacctgagtccagtggagaacctgaggatcccgagcaaggaggagttgcgggagctg
agggaacagcccatcgacccgcaggcggagcaggagatcatcgacagcatcgaggaggtt
tacttctccaccgactccttcgacatggtgcagcacgagctggagaaactcccacctgag
ctgaacctgcaggagctggaggagtacagagacaagctgaagagacagcaggcagcagtt
tctaaaaaggttgcagatctcattctggagaaacagccctcctatgtgaaggaactggag
cgagtgacagcgttacagactaacctgcagctggcagccgtcatttgcacgaatgcaagg
aggcaactgagcgtggcaaaggagggattcacagaagccagcctcggtctattggccaat
cagaggagacgacaactgctgacaggcctgcttaaatcgctgaggaccatcaagacgctg
caaagaacagatgtaagactcagcgagatgctcgaggaggaagactatccaggtgcaatc
cagctctgtctggagtgccaaaaggctgccagcaccttcaaacactacagctgcatcagt
gaattaaattccaaactacaagacactctggagcaaatagaggagcagcttgatgtcgcc
ctgtcaaagacttgtaagcactttgatgtttcgcactacaccaaggtccagctggcctac
acgctcctgggaaagacacagactgcgatggaccagctgcacatgcacttcacccaggcc
atccacaacacagtgttccaggtggtgctggggtatgtggagctgtgtgctggcaacgct
gataccaagttccagaagatgcagtacaaggatttgtgcacgcatatcacgctggacagc
tacattccctgcctgacagacctgtgcaaggcattgtgggaggtgatgctgagctatcac
cgcaccatgcagtggcatgaggagcatgacaagcaggacgcctcacccacagatgaagca
gcagctgctgagtctgacgagtcggtggtggaccgcagctacgtgaaaaagaagcttgag
cacggactgacgcggatctggcaggatgtccagttgaaagtgaaggcctacatcctgggc
accgacatgtctaacttcaagtacgatgatttcatagtggtgctggatgtcatcagcagg
ttaatgcaggtgggcgaggagttctgtggcagtaagtcggaggtcctgcaggagtccatc
aaacgccagagtgtcaactactttaaaaactatcacagggcccgactggaagagctgagg
atgtttctggaaaacgagacatgggagctgtgcccggttaagtctaactttaacatcgcc
cagctccatgagttcaagttcatgggtcagtgtcgttctccgtccgtctccccgagccgt
caggcggcgtcctccaccggcccggctccagagcagctgtctctgttccagcagtacctt
caggagggaaacccctttgagatgcccgccgagcacagagaggaggagacggaggatgtg
ctggcgtctaacgggtacgagtcagacgagctggagaagagcgtgtatcaagactacgac
agcgacagcgacgtccccgaggagctcaagcaggactttgttgacgagcagacgggcgac
gttcccctcaagagcgtgtcccgtgagaccataagaagcaagaaaaagtctgactacaac
ttaaataagaccaacgcaccaatcctcaccaacaccaccctcaacgtcatccggcttgtc
gggaagtacatgcagatgatgaacattttgaagcccatcgccttcgacgtcatccactgt
gtgtcgcagctcttcgactactacctgtacgccgtctacaccttctttggacgcaatgac
atgtatgagtcatcgggtctgggccttatcagcagcagactgagaaccacgctgaaccgg
atccaggagagtctcattgacatggaggcgttgggggagaacgccggggtccacggccca
gcagaggacaggaaggagaaggtgcccagcccccatctcagccaaatggtggtcctcacc
aacagtgggactctgtatgggctggcacagagagtggtggccactgagtctctcgtgttt
ctggctgagcagtttgaatccctccagtctcacctggacaccatgatgccggcagccaag
aagcctttcctgcagcagttttactcccagacggtgtccacagccagtgaactgcgaaaa
ccaatatattggattgttgcagccaaggccatcgactacgaacagatgttgctcctgatg
gctggagtcaagtgggacattagggagataatgtcacagcacaacgtttatgtggacgtc
ctgttgaaggagtttgagcaatttaacaagcggctgggagacgtttccagacacgtgcgc
atccctctgcccgtgtccaacgtcctgtgggagcactgcatccgcctggccaacaggact
ctcgtagagggctacgctaacgtgaagaaatgcagcaacgagggccgggctctgatgcag
ctggacttccagcagttcctcatgaagctggagaagctgaccgacctgcgacccatccct
gataaagagttcgttgagacgtacatcaaggcgtactacctgacggagaacgacatggag
cagtttatcaagaatcacagggagtactccatgaagcagctcgccaacttggtgaacgtt
tgtctgggctcccatataaacaagaaggctcgtcagaaacttctggcagccatcgacgac
attgacagacccaagagatag
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