Acanthopagrus latus (yellowfin seabream): 119016741
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Entry
119016741 CDS
T08233
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119016741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119016741
03036 Chromosome and associated proteins [BR:
alat03036
]
119016741
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119016741
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
119016741
mRNA degradation factors
5'-3' decay
Decapping complex
119016741
Chromosome and associated proteins [BR:
alat03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119016741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
119016741
NCBI-ProteinID:
XP_036948850
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All DBs
Position
3:5553908..5565151
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AA seq
489 aa
AA seq
DB search
MATARTENVGPVVMGLNKQNGQLRGQTKPASVQPAPTTQGKALGAPQIAGGAAQDGGGIK
FGDDWKKSLKLPPKDTRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQVSQISIQI
SKHLGGVKIMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPGSIDKSLYVAEFHSSGGDCDVEEVEE
KSGHQQDSA
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgccagaacagaaaacgtcggcccagtcgtcatgggactgaacaagcagaac
gggcagctcagaggacagaccaaaccagcttcggtccagccagcacccacaactcaagga
aaggctttgggtgcaccccagatagcaggcggtgctgctcaggacggaggaggcatcaag
tttggagatgactggaaaaagagcttaaagctccctcccaaagacaccagggtcaaaacc
tcagatgtgacgtcaaccaaggggaatgaatttgaagattattgcctcaaacgagaactc
ctgatgggcatctttgagatgggctgggagaaaccgtctcctattcaggaggaaagcatt
cccatcgccctgtctggacgggatattctggctcgggccaagaacggaacagggaagagt
ggagcttatctcatcccactgctggagagaatagacctgaaaaaggaccacatacaggcg
ctcgtcatggtgcccacccgtgagctggccctgcaggtgagccagatctcgatccagatc
agcaaacaccttggaggagtcaaaatcatggctaccacaggcggcaccaacctgcgagat
gacatcatgcgcctggacgagaccgtgcatgttgtcatcgccacgcccgggaggatcctg
gacttgataaagaagggagtggcaaaggtggatagagtccaaatgatggtgatggatgag
gcggataagctgctgtctcaggattttgtggtgctcatcgaggatatcatcagcttcctg
gccaagaacaggcagatcctgctctactctgcaaccttccccatcagtgtgcagaagttc
atggccaagcaccttcagaaaccgtatgagattaacctgatggaggaactgactctgaag
ggcattactcagtactacgcctacgtcacagagaggcaaaaagtccactgcctcaacacg
ctgttctccaggcttcagatcaaccagtccattatcttctgtaactccactcagagggtg
gagctcttggccaagaagatcactcagctgggctactcctgcttctacatccatgccaag
atgatgcaggaatacagaaaccgtgtgttccacgacttcagaaatggactgtgcaggaac
ctggtctgcactgatctcttcaccagaggtattgacatccaggctgtcaatgtcgtcatc
aacttcgacttccccaagaatgctgagacttacctccatcgtattgggagatcagggagg
tttggtcacctgggcttggccatcaacctgatcacatcagaggaccgattcaacctgaag
gccatcgaagaccagctggtgaccgacatcaagcccattccaggcagcatcgacaagagc
ctctacgtggctgagttccactcgtccggtggcgactgtgatgtggaggaggtggaggag
aagtcaggacaccaacaggacagcgcctaa
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