Acanthopagrus latus (yellowfin seabream): 119017345
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Entry
119017345 CDS
T08233
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119017345 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alat03021
]
119017345 (smarcc1b)
03036 Chromosome and associated proteins [BR:
alat03036
]
119017345 (smarcc1b)
Transcription machinery [BR:
alat03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119017345 (smarcc1b)
Chromosome and associated proteins [BR:
alat03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
119017345 (smarcc1b)
PBAF complex
119017345 (smarcc1b)
GBAF(ncBAF) complex
119017345 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
DUF919
Motif
Other DBs
NCBI-GeneID:
119017345
NCBI-ProteinID:
XP_036949883
LinkDB
All DBs
Position
3:complement(16571751..16580461)
Genome browser
AA seq
946 aa
AA seq
DB search
MATMSGGTNPGVPGTSQASSGTPAHRKKDSTPSARFWESTGAQLEVVRQWIGKHYKKYVL
VDAPSCQALSAVTVQLLQFQEDAFGRQASSPALTKLPSKCFLDLQPGGGLCHILGTAYKF
KAEQGWRRFDLQNPSRTERNVEMFGAVERALIQNNCMSQPVVYLDPVLDQELASRLTAII
TKHQGNLTEDRTLATHHIYPSLASSEEDEWMRPVMRKDKHVLVHWGMHPDSYDSWLSSSD
VEGEVEEPPQSEKPWRVHAGWVLDTDVFNEWMNEEDYCVDERNVPIILRRRIHLRDEQDS
KSTPSKKRRRSPSPPSEGRKKGKKGRRRGQQEEEPEEDLTKDMEDPTPVPNMEEVILPKI
VNLKKDSENTPVKGGTMADLDEQEDDFPGREDEEGRAELPRLSEGEDHITEQTHHIIIPS
YTSWFNYNSTHSIEKRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTSCRR
NLTGDVCAVMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPTGLAPLQHKP
LQVSASQHMLYFPEKNKEKPSDCQNFGLRTDIYAKKHPKTKGASAGREWTEQETLLLLEA
LEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQSENP
VMSTVAFLASVVDPRVASSAAKAALEEFSRVQEESLDKISEMSNQPDKTESMDAEKIEAN
STSHQVPLRVDGLKVEPSGAKAEGVKRENAENVLAEERDRRGDDDEMVGQREGDGDDGRV
MEQDLVEGSVATAAAAALTSAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEE
LETIMDREKEALEQQRQQLLSERQTFHTEQLKQAEMKVRQQREQQGQPGYTVQHTGQAMP
NRMMPAGGNAQPMAPRHPGAPNGMYPSSQPDGVAPAQPGPLASGHS
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtccggaggaacaaaccctggggttcctggtacaagccaagctagctcc
ggaacacccgctcatcggaaaaaagacagcactccgtccgccaggttctgggagagcaca
ggagcccagctggaggtggtgcgacagtggatcgggaagcactacaaaaagtacgtgctt
gtggatgctccatcgtgtcaggcgctgtccgcagtgaccgtgcagctgctccagttccag
gaggatgcttttggcagacaagcctccagtcctgctctcaccaagctgccttcaaaatgc
tttctggacctgcagccaggcggaggactttgccacattcttggaactgcctacaagttc
aaggctgagcaaggctggcggaggtttgacctgcagaacccatccagaactgaaaggaac
gtagagatgtttggtgctgttgaaagagcactcatccagaacaactgcatgtcacagcct
gtggtatatctggaccctgtgctggatcaggaactggctagcagacttactgcgattatc
accaaacaccagggtaatctgacagaggaccgaaccctcgccacccaccacatctacccc
tcacttgcttcttcagaggaagatgagtggatgcgtcctgtcatgcggaaagacaaacat
gtgttggtacactggggcatgcacccggacagctatgacagttggctttcctcaagtgac
gttgaaggagaggttgaagagcctccacaatcagaaaagccgtggcgggtccatgctggc
tgggttctggacacagatgttttcaacgagtggatgaacgaggaagactattgtgtggat
gagaggaatgtaccaatcattctccgtaggcgcattcaccttcgagacgaacaggattcc
aaatctaccccgtccaaaaagagaagacgctcgccctctcctccctctgaaggcagaaag
aaaggaaagaaggggagaaggcgtgggcaacaggaagaagagccagaagaagacttgacc
aaagacatggaagaccccacccctgttcctaacatggaggaggttatactacccaagatt
gtcaacttgaagaaggacagtgagaacactcctgtcaaaggagggaccatggctgacctg
gatgaacaagaggatgatttcccaggaagggaagacgaggaggggagagcagagctgcct
cgcctgtcagagggagaggaccacatcacagaacaaacccaccatatcatcataccaagc
tacacgtcgtggttcaattacaacagcactcactccatagagaagcgtgcattgcctgaa
ttcttcaatggaaagaacaagtccaaatctccagaaatctacctggcgtatcgtaacttc
atgatcgacacgtaccggctcaacccccaggagtacctcagttcaacgtcctgtaggcgc
aacctgaccggagacgtctgtgctgtcatgagggttcatgcctttttggagcagtggggt
ctgattaactaccaggtggatgcagagagcagacccctccctatgggacccccacccacc
cctcatttcaacgtactggctgacacaccgaccgggctggcccccttacagcacaaaccc
ctgcaggtgtcggcctcgcagcacatgttgtatttccctgaaaagaacaaagagaagccg
tcagactgccagaactttggcctccgcaccgacatctacgccaagaaacatcctaagact
aaaggagcgagcgcgggaagagaatggacggagcaggagacactcttgctattagaggcc
ttggaggtctacagagatgactggaacaaggtgtccgagcacgttggctccagaacgcaa
gatgagtgcatcctccacttccttcgcctgccgatagaagacccctacctggaagactcc
tctgcctccctcggcccactggcgtaccagcccgtgcctttcagccaatcagaaaaccct
gtcatgagcactgtggccttccttgcatctgtggtggacccgcgggtggcgtcgtcagca
gctaaggcagcactggaggagttttcccgagtacaggaggagtccttggataagatttct
gagatgtccaaccagcctgacaaaacggaatcgatggatgctgaaaaaattgaggccaac
tccacctcccaccaggtccctttaagagtggatgggctcaaggtggaacccagtggggcc
aaagcagagggagtcaaaagggaaaatgctgaaaatgtccttgcagaggagagagacaga
aggggtgatgatgacgagatggtggggcagcgggagggagacggggatgatgggagagtg
atggagcaggacctggtggagggcagcgttgccacagcggcagcagctgctctgacctcg
gctgccacgaaggccaagcacttggcagcagttgaagagaggaagatcaagtccctggtg
gctctgctggtggagacccagatgaagaagctggagatcaagctgaggcactttgaggag
ctggagaccatcatggaccgcgagaaagaggctctagagcagcagcggcagcagctcctg
tcagagagacagacgttccacacagagcagctgaaacaggcagagatgaaggttcgccag
cagagggagcagcagggccagccgggatacacagtgcagcatacaggtcaggccatgccc
aatcggatgatgcctgcgggaggaaacgctcagccgatggcacctcgacaccctggagct
cccaatggaatgtatccgtcctcgcagcctgatggagtagcaccagcgcagccgggtcct
ctggcgtccggtcacagctga
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integrated database retrieval system
