Acanthopagrus latus (yellowfin seabream): 119017890
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Entry
119017890 CDS
T08233
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119017890
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alat00536
]
119017890
Glycosaminoglycan binding proteins [BR:
alat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119017890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
119017890
NCBI-ProteinID:
XP_036950935
LinkDB
All DBs
Position
1:6305455..6351833
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AA seq
1740 aa
AA seq
DB search
MMDRWSSVRETWLLVVFVTVFYTSRAADPIDVLKVLELSEDMEGVSLEAGLCTSREGREE
TDLSYKIDKKIQLSAPTKQLFPHSPFPMNFSVMTTVRAVKSSQVFLLSLYDSQGTQQLGV
EIGRSPVFLYEDHEGQPPPELYPTFRKINLADGKWHRVAYSVEGQSVTLYLDCVKLDTLD
LLRGFDPHISTDGVTVFGTRLLDEGVFEGDIQQLLIVEDPRAAETYCQDYIPDCHAPLPY
NTILVEAEEVERAPKKHVVEQFEEFDYSDLYDDLSVSTVTASPNVTEYEIVEYEDYDNTT
EYYQVNEYEYEEEYDERYGPAERERELSLNTEDIPEKGQKGEPGYLGPGTQITGPHGLPG
PEGEAGPPGITGPVGPRGDAGEPGPPGRPGLNGADGIPGPPGNIMLIPFQSGGDPKLGTV
VSAQEAQAQAILQQTKLAMKGPPGPLGLRGRPGPLGPPGSSGLKGSSGDMGPAGPPGLTG
IPGQNGRIGKMGRAGEDGARGAIGETGAKGDRGFDGLPGLPGNKGHKGDRGKPGPVGPAG
EPGEKGSEGPAGPRGQPGDAGSRGLNGPRGRPGPPGRTGIRGIDGVQGSKGNIGQPGDIG
ATGQQGNPGILGFPGPQGLVGHPGEKGPQGKKGMQGLPGNDGPPGHPGREGTPGEKGLPG
PLGVQGPVGYPGQRGVKGADGIRGLKGSKGEKGEDGFPGAKGEMGAKGDVGDNGAAGGRG
EDGPEGPKGQMGPQGESGPLGTSGEKGKLGVPGLPGYPGRQGPKGSDGFPGVLGAGGEKG
KKGPAGQPGGAGQRGPNGARGSRGAKGPTGKSGEKGASGHDGPSGSPGERGPQGPQGRNG
EPGPKGSSGPAGKDGLPGHPGQRGEPGFQGKTGPPGPMGVVGPQGKSGESGPTGDRGHPG
APGVPGEHGLPGAAGKEGGKGDPGLPGTSGKNGPAGLKGFRGSRGAAGIMGPPGLKGGSG
PTGAQGAIGSTGERGPSGPAGAIGQPGRAGAIGGPGPMGEKGEPGEKGPIGPAGQDGEQG
PVGMPGTTGPAGPPGDDGDKGEQGEPGQKGSKGDKGEGGPSGPAGTQGLIGQPGLPGVDG
LVGPRGQQGMYGPKGDEGLRGFKGGRGPMGLQGMPGLPGEKGESGHVGLMGPPGQQGPTG
PQGPVGGLGPTGRPGMIGTAGVVGEKGEDGEAGDPGSVGVPGRPGEKGDQGEKGDTGLPG
AAGPAGARGPTGEDGAKGNAGPIGLTGDLGQQGEAGINGVDGLPGSKGDTGEPGKSGPPG
AAGEPGPSGPPGRRGHLGKPGKEGKAGLKGAKGAPGFEGPIGKTGPVGAQGHPGKSGPQG
LRGIPGPAGEQGLNGPPGQSGPPGPMGPPGLLGLKGDHGKKGDKGHGGLIGLIGPPGDIG
EKGDRGLPGNQGQSGPKGDEGPVGPQGPHGPPGPTGLSGAIGEKGSKGNQGPIGPRGDTG
PAGPPGPPGSPAIGISPLPERGRRRRTDSSVDGAVFEEEEEETDGGEEERMQRDQAEQNG
LMKEKEGQGMEEVFASLSSMKVEVEGLRNPQGTYHSPARTCKELWLLSPGLPNGEYWIDP
NQGCHRDSFKVFCNFTAQGETCLYPDKKFQSVKLAAWKGEKSGTWYSKFRKGKKFSYSGS
DGVPVHVVQFNFLQLLSATAKQTFTYHCLNSAAWLHTATFSHEHALRFRGSNGEELTHEN
THYISALYDGCQTRSGQERTVLEFDAPLSSTLPILDVAVSDFGNGNQKFGFQVGPVCFNG
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgatggatcgatggagctcagtgcgcgagacgtggctgctggtggtgttcgtcacggtg
ttttacacctcaagggcagccgatcctattgatgtcctgaaggtcctggagctgtcagag
gacatggagggagtgtcgttggaggcaggactgtgcaccagcagagagggacgggaggag
acggacctctcctacaagatcgacaagaagattcaactgagcgcgcccaccaagcaactc
ttccctcattcgcctttcccgatgaatttctcagtgatgacaacagtcagagctgtgaaa
agctctcaggtctttctcctgtccctgtacgactcacaggggacacagcagctgggtgtg
gagattggccgttcgcctgtcttcctctatgaggaccatgagggtcagccacccccagag
ctttaccccaccttcaggaagatcaacctggctgatggcaagtggcatcgagtagcctac
agtgtggagggccagtctgtgactctgtacctggactgtgtcaaactggacaccctggac
ttgctcaggggttttgacccccacatcagcactgatggggtcactgtgtttggaacgcga
ctgctggacgaaggcgtgtttgagggagacattcagcagctgctgatcgtcgaagacccc
agagcagcagagacctactgtcaggactacatcccagactgtcacgcgcctttgccttac
aacaccatattagtagaagctgaggaggtggagagagctcctaagaaacatgttgtggag
cagtttgaagagtttgactacagtgacctctatgacgacttgtctgtttctacggtgact
gcaagtcctaatgtcacagagtatgagatcgtagagtacgaagactatgacaacacaacg
gagtactaccaagtgaacgagtatgaatacgaggaagaatacgatgagcgctatggaccg
gccgagagagaacgggagctctcgcttaacacagaggatataccagaaaaaggacagaaa
ggcgagccgggctacttgggaccgggaacacagattacaggaccacatgggcttccagga
ccggagggagaggcagggcctcctggaatcacaggaccagtaggacctcgaggagacgct
ggggagccgggccctccagggcggccaggccttaacggagctgatgggataccaggcccc
ccaggaaacatcatgctcataccgttccagtcaggtggtgatccgaagttaggtactgtg
gtttctgcacaggaggcgcaggctcaggccatcctgcagcagaccaagctggcaatgaag
ggaccaccagggccgctcggcctcaggggtagaccaggaccactgggtccaccaggttcc
tctgggctgaagggcagcagtggagacatggggccagcgggtcctccaggactgacaggt
atcccaggtcagaacgggcgaattgggaaaatgggtcgagcaggtgaagatggggcccgt
ggtgcgataggagagactggagcaaagggggatagaggctttgacggcctgcctggtctg
ccaggaaacaaaggacataaaggggacaggggtaagccaggccctgtaggtcctgcagga
gagccaggagagaagggctctgaggggccagcgggaccaagaggacaaccaggcgatgct
ggttccagaggtttgaatgggcccagaggtcgtcctggtccacccggccgcactggcatc
cgaggaattgacggggttcaaggttcaaagggaaacataggacaaccaggagacatcgga
gcaactggacaacaaggcaaccctggaatcctgggttttcctggtcctcaggggttagtc
gggcatccaggagagaaagggcctcaagggaagaaagggatgcagggcttacctggaaac
gatgggcccccaggtcaccctggaagagaaggcactccgggtgaaaaaggactgccgggt
cctctgggagtgcaggggcctgtcggatatcctggacaacgaggagttaagggagcagat
ggaatcagaggattaaagggaagcaaaggtgaaaagggagaggatggtttcccaggggcc
aaaggggaaatgggagcaaagggggacgttggagacaacggagctgcaggtggcagagga
gaagatgggcctgaggggccgaaaggccagatgggtccacaaggagaaagtggccctctt
ggtacttctggagagaagggtaaacttggagttcctgggctgccaggatatccaggacga
caggggccgaagggttctgatgggtttcctggtgtactgggagccggaggagaaaagggg
aaaaaaggtcctgcaggacaaccaggaggtgcaggccagaggggtccaaatggtgcacga
ggttccagaggggctaaagggcctacaggaaaatcgggagaaaagggcgcctcaggacac
gatgggccatccggatctcctggagagaggggacctcaagggccgcaaggaaggaatgga
gagccaggacctaaaggatccagcggtccagctgggaaggatggacttccaggtcaccca
ggtcaaagaggagagccgggattccaagggaagacgggacctccaggacccatgggggtt
gttggaccacagggcaaatcgggagaatcaggtccaacaggggaccgcggccacccaggg
gcaccaggtgtacctggagaacacggtttacctggggctgctgggaaagaaggtggaaag
ggtgatccaggtttacctgggacatctgggaagaacggtcctgcagggctgaaagggttc
agagggagcagaggagccgctggaattatgggacctcctggtctgaaaggtggatcagga
cctactggagcccaaggagctatagggtcgacaggtgagaggggcccttcaggtccagcg
ggagccatcggacaacctggtcgggccggagcaatcggaggacctggaccaatgggagag
aagggcgaacctggagagaaaggtccgataggaccagctggtcaagatggagaacaggga
cctgtagggatgcctgggactacaggaccggcaggacctccaggagatgacggggataag
ggagagcagggagaacctggacagaaaggcagcaaaggagacaaaggagaaggaggccct
tcaggtccagctggcactcaaggtctcattgggcagcctggacttccgggtgtagatgga
ctggtgggcccccgaggccagcagggcatgtacggtccaaaaggagatgaggggctccgt
ggcttcaagggcggtagaggaccgatgggattacagggcatgcctggtctgccaggagag
aagggtgagagtggacatgtgggactcatgggtcctcctggtcaacaaggccccactggt
cctcaaggacccgttggtggactgggtcccaccggtcgacctggcatgataggaacagca
ggtgttgttggagaaaagggggaggatggcgaggcaggtgaccccggttcagtcggagtt
ccaggaagaccaggagaaaaaggagaccagggagagaagggagatacaggccttcccgga
gcagctggtcctgcaggagccaggggcccaacaggggaggatggagccaagggcaatgct
ggtcctatcggtcttactggggatctcggacagcagggagaagctggaatcaatggtgtg
gatggtctgccagggtctaaaggagacacaggagaacctgggaaatctgggccaccagga
gccgcaggagaacctggaccttctggacctccgggccgaaggggccacttgggaaaacca
ggcaaggaaggaaaggcaggcctgaaaggagcgaagggtgctcctggttttgagggtccc
atagggaagacaggacccgtaggtgcccaaggacaccctgggaagtctggtcctcaaggt
ttaagagggatccccggccctgcaggtgagcagggtttaaatggaccgcctggccagtca
ggacctccaggtcctatgggtccaccaggattacttggactaaagggagatcatggcaag
aagggagacaagggtcatggtggtctgataggtctgatcgggccaccaggagacattgga
gagaagggcgaccgaggactgccgggaaaccagggacagtcgggtccaaaaggagatgag
ggtccagttggtccacaaggtccacacggtccccctggccccacgggtctgtctggtgct
attggtgaaaagggctccaaaggaaaccagggtccaattggtcccagaggagacactggg
cctgcagggcctccaggaccaccaggatcgccagcgattgggatttcccctctaccagag
cggggacgcaggaggaggaccgacagctctgtggatggtgctgtgtttgaagaggaggag
gaggagacagacggaggcgaggaggaaaggatgcagagggaccaggcggagcagaacggt
ttgatgaaggagaaggagggccagggcatggaggaagtatttgcatctctgtcctctatg
aaagtagaggtggaaggtctgcgtaacccacaagggacgtaccacagccctgcccgcacc
tgcaaggagctctggctcctcagccccgggctcccgaacggtgagtactggatagatcca
aaccagggttgccatagagactccttcaaggtgttttgcaacttcactgcacaaggagag
acatgtctgtaccctgacaagaagttccagtcggtgaagttagcagcctggaaaggggaa
aagtctggcacctggtacagtaaattcaggaaaggaaaaaagttttcctacagcgggtcg
gatggtgttcctgtccacgtggtccagtttaatttcctgcagctgctgagcgcgacagcg
aagcagaccttcacctaccactgcctcaactctgccgcctggctgcacaccgccaccttc
agccacgagcacgcactccgcttcagaggcagcaacggggaggagctgacgcacgagaac
acacattacatcagtgcgctgtatgacgggtgtcagacacgctcagggcaagagaggaca
gtgttggagtttgatgctccgctgtcctccacgctccccatcctcgacgtggctgtgtct
gattttgggaacgggaaccagaagtttggattccaagttggtccggtctgcttcaacggt
taa
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